Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
AP4S1Q9Y587 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
AP4S1Q9Y587 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
AP4S1Q9Y587 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
AP4S1Q9Y587 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
AP4S1Q9Y587 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
AP4S1Q9Y587 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC21.99■■□□□ 1.11
AP4S1Q9Y587 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.99■■□□□ 1.11
AP4S1Q9Y587 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
AP4S1Q9Y587 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
AP4S1Q9Y587 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
AP4S1Q9Y587 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.99■■□□□ 1.11
AP4S1Q9Y587 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
AP4S1Q9Y587 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
AP4S1Q9Y587 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
AP4S1Q9Y587 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.98■■□□□ 1.11
AP4S1Q9Y587 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
AP4S1Q9Y587 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC21.98■■□□□ 1.11
AP4S1Q9Y587 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
AP4S1Q9Y587 AC008813.1-201ENST00000536597 885 ntBASIC21.98■■□□□ 1.11
AP4S1Q9Y587 AC148477.6-201ENST00000623746 465 ntBASIC21.98■■□□□ 1.11
AP4S1Q9Y587 AC233723.2-201ENST00000623798 2106 ntBASIC21.98■■□□□ 1.11
AP4S1Q9Y587 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.98■■□□□ 1.11
AP4S1Q9Y587 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
AP4S1Q9Y587 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
AP4S1Q9Y587 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
AP4S1Q9Y587 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.97■■□□□ 1.11
AP4S1Q9Y587 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
AP4S1Q9Y587 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
AP4S1Q9Y587 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.97■■□□□ 1.11
AP4S1Q9Y587 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
AP4S1Q9Y587 EP400NL-214ENST00000641289 2402 ntBASIC21.96■■□□□ 1.11
AP4S1Q9Y587 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.96■■□□□ 1.11
AP4S1Q9Y587 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.96■■□□□ 1.11
AP4S1Q9Y587 AP006261.1-201ENST00000584783 668 ntBASIC21.96■■□□□ 1.11
AP4S1Q9Y587 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.96■■□□□ 1.11
AP4S1Q9Y587 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
AP4S1Q9Y587 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
AP4S1Q9Y587 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
AP4S1Q9Y587 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.96■■□□□ 1.11
AP4S1Q9Y587 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
AP4S1Q9Y587 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
AP4S1Q9Y587 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
AP4S1Q9Y587 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
AP4S1Q9Y587 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
AP4S1Q9Y587 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
AP4S1Q9Y587 LINC00565-201ENST00000562710 2331 ntBASIC21.95■■□□□ 1.1
AP4S1Q9Y587 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
AP4S1Q9Y587 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
AP4S1Q9Y587 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
AP4S1Q9Y587 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
AP4S1Q9Y587 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
AP4S1Q9Y587 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
AP4S1Q9Y587 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.94■■□□□ 1.1
AP4S1Q9Y587 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.94■■□□□ 1.1
AP4S1Q9Y587 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
AP4S1Q9Y587 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
AP4S1Q9Y587 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.93■■□□□ 1.1
AP4S1Q9Y587 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
AP4S1Q9Y587 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
AP4S1Q9Y587 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
AP4S1Q9Y587 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
AP4S1Q9Y587 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
AP4S1Q9Y587 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
AP4S1Q9Y587 HLA-L-211ENST00000482052 1765 ntBASIC21.92■■□□□ 1.1
AP4S1Q9Y587 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
AP4S1Q9Y587 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
AP4S1Q9Y587 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
AP4S1Q9Y587 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.92■■□□□ 1.1
AP4S1Q9Y587 AC044849.2-201ENST00000606596 710 ntBASIC21.92■■□□□ 1.1
AP4S1Q9Y587 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
AP4S1Q9Y587 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.92■■□□□ 1.1
AP4S1Q9Y587 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
AP4S1Q9Y587 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
AP4S1Q9Y587 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
AP4S1Q9Y587 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
AP4S1Q9Y587 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.9■■□□□ 1.1
AP4S1Q9Y587 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
AP4S1Q9Y587 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
AP4S1Q9Y587 DUX4L29-201ENST00000425409 679 ntBASIC21.9■■□□□ 1.1
AP4S1Q9Y587 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.9■■□□□ 1.1
AP4S1Q9Y587 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
AP4S1Q9Y587 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
AP4S1Q9Y587 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
AP4S1Q9Y587 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
AP4S1Q9Y587 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
AP4S1Q9Y587 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.9■■□□□ 1.1
AP4S1Q9Y587 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
AP4S1Q9Y587 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.9■■□□□ 1.1
AP4S1Q9Y587 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
AP4S1Q9Y587 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.1
AP4S1Q9Y587 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
AP4S1Q9Y587 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC21.89■■□□□ 1.09
AP4S1Q9Y587 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
AP4S1Q9Y587 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
AP4S1Q9Y587 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
AP4S1Q9Y587 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
AP4S1Q9Y587 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
AP4S1Q9Y587 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
AP4S1Q9Y587 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms