Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LIME1Q9H400 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LIME1Q9H400 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LIME1Q9H400 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
LIME1Q9H400 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIME1Q9H400 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIME1Q9H400 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
LIME1Q9H400 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.5■□□□□ 0.87
LIME1Q9H400 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
LIME1Q9H400 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.5■□□□□ 0.87
LIME1Q9H400 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LIME1Q9H400 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.5■□□□□ 0.87
LIME1Q9H400 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.5■□□□□ 0.87
LIME1Q9H400 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LIME1Q9H400 AC093323.1-202ENST00000635031 2045 ntBASIC20.49■□□□□ 0.87
LIME1Q9H400 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIME1Q9H400 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIME1Q9H400 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
LIME1Q9H400 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LIME1Q9H400 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.49■□□□□ 0.87
LIME1Q9H400 AC010997.5-201ENST00000609182 354 ntBASIC20.49■□□□□ 0.87
LIME1Q9H400 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIME1Q9H400 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIME1Q9H400 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIME1Q9H400 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIME1Q9H400 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.48■□□□□ 0.87
LIME1Q9H400 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.48■□□□□ 0.87
LIME1Q9H400 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.48■□□□□ 0.87
LIME1Q9H400 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.48■□□□□ 0.87
LIME1Q9H400 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.48■□□□□ 0.87
LIME1Q9H400 MIR4466-201ENST00000606121 54 ntBASIC20.48■□□□□ 0.87
LIME1Q9H400 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIME1Q9H400 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.48■□□□□ 0.87
LIME1Q9H400 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIME1Q9H400 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIME1Q9H400 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LIME1Q9H400 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
LIME1Q9H400 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LIME1Q9H400 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIME1Q9H400 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
LIME1Q9H400 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.47■□□□□ 0.87
LIME1Q9H400 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIME1Q9H400 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
LIME1Q9H400 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.47■□□□□ 0.87
LIME1Q9H400 MIR3621-201ENST00000580529 85 ntBASIC20.47■□□□□ 0.87
LIME1Q9H400 MIR4281-201ENST00000580852 62 ntBASIC20.47■□□□□ 0.87
LIME1Q9H400 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LIME1Q9H400 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIME1Q9H400 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC20.47■□□□□ 0.87
LIME1Q9H400 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LIME1Q9H400 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIME1Q9H400 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LIME1Q9H400 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIME1Q9H400 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIME1Q9H400 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LIME1Q9H400 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIME1Q9H400 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
LIME1Q9H400 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
LIME1Q9H400 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIME1Q9H400 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.45■□□□□ 0.86
LIME1Q9H400 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIME1Q9H400 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIME1Q9H400 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
LIME1Q9H400 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIME1Q9H400 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LIME1Q9H400 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIME1Q9H400 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
LIME1Q9H400 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIME1Q9H400 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.44■□□□□ 0.86
LIME1Q9H400 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.44■□□□□ 0.86
LIME1Q9H400 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.44■□□□□ 0.86
LIME1Q9H400 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
LIME1Q9H400 MIR6724-1-201ENST00000616420 92 ntBASIC20.44■□□□□ 0.86
LIME1Q9H400 MIR6724-2-201ENST00000616483 92 ntBASIC20.44■□□□□ 0.86
LIME1Q9H400 MIR6724-4-201ENST00000617390 92 ntBASIC20.44■□□□□ 0.86
LIME1Q9H400 MIR6724-3-201ENST00000622482 92 ntBASIC20.44■□□□□ 0.86
LIME1Q9H400 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIME1Q9H400 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.44■□□□□ 0.86
LIME1Q9H400 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIME1Q9H400 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIME1Q9H400 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIME1Q9H400 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIME1Q9H400 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.43■□□□□ 0.86
LIME1Q9H400 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
LIME1Q9H400 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.43■□□□□ 0.86
LIME1Q9H400 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIME1Q9H400 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIME1Q9H400 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIME1Q9H400 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
LIME1Q9H400 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.43■□□□□ 0.86
LIME1Q9H400 ERN1-208ENST00000606895 2068 ntBASIC20.42■□□□□ 0.86
LIME1Q9H400 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIME1Q9H400 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
LIME1Q9H400 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
LIME1Q9H400 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIME1Q9H400 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIME1Q9H400 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
LIME1Q9H400 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.42■□□□□ 0.86
LIME1Q9H400 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIME1Q9H400 MTDHP2-201ENST00000601468 714 ntBASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms