Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
NKX2-4Q9H2Z4 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
NKX2-4Q9H2Z4 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
NKX2-4Q9H2Z4 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC25.18■■□□□ 1.62
NKX2-4Q9H2Z4 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
NKX2-4Q9H2Z4 IRS3P-201ENST00000223076 1006 ntBASIC25.17■■□□□ 1.62
NKX2-4Q9H2Z4 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
NKX2-4Q9H2Z4 IKBKGP1-201ENST00000612193 1073 ntBASIC25.17■■□□□ 1.62
NKX2-4Q9H2Z4 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC25.17■■□□□ 1.62
NKX2-4Q9H2Z4 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC25.17■■□□□ 1.62
NKX2-4Q9H2Z4 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
NKX2-4Q9H2Z4 AP004609.3-201ENST00000610705 1884 ntBASIC25.17■■□□□ 1.62
NKX2-4Q9H2Z4 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC25.17■■□□□ 1.62
NKX2-4Q9H2Z4 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
NKX2-4Q9H2Z4 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
NKX2-4Q9H2Z4 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
NKX2-4Q9H2Z4 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC25.16■■□□□ 1.62
NKX2-4Q9H2Z4 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC25.16■■□□□ 1.62
NKX2-4Q9H2Z4 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC25.16■■□□□ 1.62
NKX2-4Q9H2Z4 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
NKX2-4Q9H2Z4 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
NKX2-4Q9H2Z4 JTB-203ENST00000368589 1216 ntTSL 2 BASIC25.15■■□□□ 1.62
NKX2-4Q9H2Z4 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC25.15■■□□□ 1.62
NKX2-4Q9H2Z4 AC027682.1-201ENST00000562846 899 ntBASIC25.15■■□□□ 1.62
NKX2-4Q9H2Z4 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
NKX2-4Q9H2Z4 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
NKX2-4Q9H2Z4 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
NKX2-4Q9H2Z4 LBH-205ENST00000407930 756 ntTSL 2 BASIC25.14■■□□□ 1.62
NKX2-4Q9H2Z4 AC008764.7-201ENST00000593779 1081 ntBASIC25.14■■□□□ 1.62
NKX2-4Q9H2Z4 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC25.13■■□□□ 1.61
NKX2-4Q9H2Z4 SERBP1P1-201ENST00000396021 1160 ntBASIC25.13■■□□□ 1.61
NKX2-4Q9H2Z4 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC25.13■■□□□ 1.61
NKX2-4Q9H2Z4 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC25.13■■□□□ 1.61
NKX2-4Q9H2Z4 AC090877.2-201ENST00000558441 1738 ntBASIC25.12■■□□□ 1.61
NKX2-4Q9H2Z4 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
NKX2-4Q9H2Z4 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
NKX2-4Q9H2Z4 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC25.12■■□□□ 1.61
NKX2-4Q9H2Z4 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
NKX2-4Q9H2Z4 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
NKX2-4Q9H2Z4 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
NKX2-4Q9H2Z4 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
NKX2-4Q9H2Z4 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
NKX2-4Q9H2Z4 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC25.11■■□□□ 1.61
NKX2-4Q9H2Z4 AC092171.4-201ENST00000609130 632 ntBASIC25.11■■□□□ 1.61
NKX2-4Q9H2Z4 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
NKX2-4Q9H2Z4 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC25.11■■□□□ 1.61
NKX2-4Q9H2Z4 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
NKX2-4Q9H2Z4 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
NKX2-4Q9H2Z4 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
NKX2-4Q9H2Z4 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC25.1■■□□□ 1.61
NKX2-4Q9H2Z4 RHOF-204ENST00000537265 699 ntTSL 2 BASIC25.1■■□□□ 1.61
NKX2-4Q9H2Z4 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
NKX2-4Q9H2Z4 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC25.1■■□□□ 1.61
NKX2-4Q9H2Z4 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
NKX2-4Q9H2Z4 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC25.09■■□□□ 1.61
NKX2-4Q9H2Z4 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC25.09■■□□□ 1.61
NKX2-4Q9H2Z4 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC25.09■■□□□ 1.61
NKX2-4Q9H2Z4 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC25.09■■□□□ 1.61
NKX2-4Q9H2Z4 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
NKX2-4Q9H2Z4 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC25.08■■□□□ 1.61
NKX2-4Q9H2Z4 AC099791.1-201ENST00000416440 715 ntBASIC25.08■■□□□ 1.61
NKX2-4Q9H2Z4 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC25.08■■□□□ 1.61
NKX2-4Q9H2Z4 AC022517.1-201ENST00000592429 346 ntBASIC25.08■■□□□ 1.61
NKX2-4Q9H2Z4 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
NKX2-4Q9H2Z4 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
NKX2-4Q9H2Z4 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
NKX2-4Q9H2Z4 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.07■■□□□ 1.6
NKX2-4Q9H2Z4 ASB1-202ENST00000409297 878 ntTSL 5 BASIC25.07■■□□□ 1.6
NKX2-4Q9H2Z4 SP2-202ENST00000613139 908 ntTSL 5 BASIC25.07■■□□□ 1.6
NKX2-4Q9H2Z4 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
NKX2-4Q9H2Z4 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
NKX2-4Q9H2Z4 PTCHD3P2-201ENST00000424937 1205 ntBASIC25.06■■□□□ 1.6
NKX2-4Q9H2Z4 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC25.06■■□□□ 1.6
NKX2-4Q9H2Z4 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC25.06■■□□□ 1.6
NKX2-4Q9H2Z4 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
NKX2-4Q9H2Z4 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
NKX2-4Q9H2Z4 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
NKX2-4Q9H2Z4 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC25.05■■□□□ 1.6
NKX2-4Q9H2Z4 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
NKX2-4Q9H2Z4 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
NKX2-4Q9H2Z4 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
NKX2-4Q9H2Z4 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC25.05■■□□□ 1.6
NKX2-4Q9H2Z4 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC25.05■■□□□ 1.6
NKX2-4Q9H2Z4 AC005703.6-201ENST00000623265 1329 ntBASIC25.05■■□□□ 1.6
NKX2-4Q9H2Z4 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
NKX2-4Q9H2Z4 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
NKX2-4Q9H2Z4 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC25.04■■□□□ 1.6
NKX2-4Q9H2Z4 AL137784.2-201ENST00000607332 1000 ntBASIC25.04■■□□□ 1.6
NKX2-4Q9H2Z4 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX2-4Q9H2Z4 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC25.04■■□□□ 1.6
NKX2-4Q9H2Z4 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC25.04■■□□□ 1.6
NKX2-4Q9H2Z4 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NKX2-4Q9H2Z4 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC25.03■■□□□ 1.6
NKX2-4Q9H2Z4 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
NKX2-4Q9H2Z4 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC25.03■■□□□ 1.6
NKX2-4Q9H2Z4 AC099791.2-201ENST00000605725 427 ntBASIC25.03■■□□□ 1.6
NKX2-4Q9H2Z4 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC25.03■■□□□ 1.6
NKX2-4Q9H2Z4 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
NKX2-4Q9H2Z4 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
NKX2-4Q9H2Z4 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC25.02■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms