Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC26.23■■□□□ 1.79
UPF3AQ9H1J1 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
UPF3AQ9H1J1 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
UPF3AQ9H1J1 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
UPF3AQ9H1J1 UNC93B3-201ENST00000308076 687 ntBASIC26.22■■□□□ 1.79
UPF3AQ9H1J1 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
UPF3AQ9H1J1 SUDS3P1-201ENST00000505831 966 ntBASIC26.21■■□□□ 1.79
UPF3AQ9H1J1 AC142381.2-201ENST00000566120 298 ntBASIC26.21■■□□□ 1.79
UPF3AQ9H1J1 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
UPF3AQ9H1J1 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
UPF3AQ9H1J1 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
UPF3AQ9H1J1 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC26.2■■□□□ 1.79
UPF3AQ9H1J1 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC26.2■■□□□ 1.78
UPF3AQ9H1J1 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
UPF3AQ9H1J1 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC26.2■■□□□ 1.78
UPF3AQ9H1J1 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
UPF3AQ9H1J1 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
UPF3AQ9H1J1 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
UPF3AQ9H1J1 AL136162.1-201ENST00000607711 1078 ntBASIC26.19■■□□□ 1.78
UPF3AQ9H1J1 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC26.19■■□□□ 1.78
UPF3AQ9H1J1 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC26.18■■□□□ 1.78
UPF3AQ9H1J1 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
UPF3AQ9H1J1 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
UPF3AQ9H1J1 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
UPF3AQ9H1J1 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
UPF3AQ9H1J1 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
UPF3AQ9H1J1 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC26.17■■□□□ 1.78
UPF3AQ9H1J1 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
UPF3AQ9H1J1 RARRES2P6-201ENST00000567333 442 ntBASIC26.17■■□□□ 1.78
UPF3AQ9H1J1 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC26.17■■□□□ 1.78
UPF3AQ9H1J1 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
UPF3AQ9H1J1 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC26.17■■□□□ 1.78
UPF3AQ9H1J1 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
UPF3AQ9H1J1 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
UPF3AQ9H1J1 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
UPF3AQ9H1J1 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
UPF3AQ9H1J1 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
UPF3AQ9H1J1 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC26.16■■□□□ 1.78
UPF3AQ9H1J1 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
UPF3AQ9H1J1 AC097639.1-201ENST00000565519 1891 ntBASIC26.16■■□□□ 1.78
UPF3AQ9H1J1 AC096887.2-201ENST00000623443 1957 ntBASIC26.16■■□□□ 1.78
UPF3AQ9H1J1 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
UPF3AQ9H1J1 AC135279.3-201ENST00000610945 1311 ntBASIC26.15■■□□□ 1.78
UPF3AQ9H1J1 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
UPF3AQ9H1J1 SRD5A1P1-201ENST00000442297 786 ntBASIC26.15■■□□□ 1.78
UPF3AQ9H1J1 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC26.15■■□□□ 1.78
UPF3AQ9H1J1 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
UPF3AQ9H1J1 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
UPF3AQ9H1J1 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
UPF3AQ9H1J1 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
UPF3AQ9H1J1 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC26.14■■□□□ 1.78
UPF3AQ9H1J1 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC26.14■■□□□ 1.78
UPF3AQ9H1J1 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC26.14■■□□□ 1.77
UPF3AQ9H1J1 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.77
UPF3AQ9H1J1 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
UPF3AQ9H1J1 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC26.13■■□□□ 1.77
UPF3AQ9H1J1 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
UPF3AQ9H1J1 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
UPF3AQ9H1J1 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
UPF3AQ9H1J1 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
UPF3AQ9H1J1 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
UPF3AQ9H1J1 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
UPF3AQ9H1J1 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
UPF3AQ9H1J1 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC26.13■■□□□ 1.77
UPF3AQ9H1J1 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC26.13■■□□□ 1.77
UPF3AQ9H1J1 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC26.13■■□□□ 1.77
UPF3AQ9H1J1 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
UPF3AQ9H1J1 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC26.12■■□□□ 1.77
UPF3AQ9H1J1 EDA-201ENST00000338901 1233 ntBASIC26.12■■□□□ 1.77
UPF3AQ9H1J1 AC026271.2-201ENST00000428091 497 ntBASIC26.12■■□□□ 1.77
UPF3AQ9H1J1 AC004448.1-201ENST00000458332 883 ntBASIC26.12■■□□□ 1.77
UPF3AQ9H1J1 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC26.12■■□□□ 1.77
UPF3AQ9H1J1 AC024257.2-201ENST00000549699 147 ntBASIC26.12■■□□□ 1.77
UPF3AQ9H1J1 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC26.12■■□□□ 1.77
UPF3AQ9H1J1 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC26.12■■□□□ 1.77
UPF3AQ9H1J1 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
UPF3AQ9H1J1 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC26.11■■□□□ 1.77
UPF3AQ9H1J1 GATM-206ENST00000558336 1522 ntTSL 2 BASIC26.11■■□□□ 1.77
UPF3AQ9H1J1 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC26.11■■□□□ 1.77
UPF3AQ9H1J1 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC26.11■■□□□ 1.77
UPF3AQ9H1J1 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
UPF3AQ9H1J1 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC26.11■■□□□ 1.77
UPF3AQ9H1J1 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC26.11■■□□□ 1.77
UPF3AQ9H1J1 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC26.1■■□□□ 1.77
UPF3AQ9H1J1 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
UPF3AQ9H1J1 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
UPF3AQ9H1J1 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
UPF3AQ9H1J1 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
UPF3AQ9H1J1 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC26.1■■□□□ 1.77
UPF3AQ9H1J1 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
UPF3AQ9H1J1 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
UPF3AQ9H1J1 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
UPF3AQ9H1J1 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
UPF3AQ9H1J1 AL355001.2-201ENST00000620617 1191 ntBASIC26.09■■□□□ 1.77
UPF3AQ9H1J1 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC26.09■■□□□ 1.77
UPF3AQ9H1J1 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
UPF3AQ9H1J1 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC26.09■■□□□ 1.77
UPF3AQ9H1J1 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC26.09■■□□□ 1.77
UPF3AQ9H1J1 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
UPF3AQ9H1J1 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC26.08■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms