Protein–RNA interactions for Protein: Q96SZ6

CDK5RAP1, CDK5 regulatory subunit-associated protein 1, humanhuman

Known RBP Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP1Q96SZ6 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CDK5RAP1Q96SZ6 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CDK5RAP1Q96SZ6 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC24.32■■□□□ 1.48
CDK5RAP1Q96SZ6 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC24.32■■□□□ 1.48
CDK5RAP1Q96SZ6 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CDK5RAP1Q96SZ6 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CDK5RAP1Q96SZ6 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC24.31■■□□□ 1.48
CDK5RAP1Q96SZ6 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
CDK5RAP1Q96SZ6 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CDK5RAP1Q96SZ6 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC24.31■■□□□ 1.48
CDK5RAP1Q96SZ6 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC24.31■■□□□ 1.48
CDK5RAP1Q96SZ6 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
CDK5RAP1Q96SZ6 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CDK5RAP1Q96SZ6 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CDK5RAP1Q96SZ6 AL356441.2-201ENST00000443009 864 ntBASIC24.3■■□□□ 1.48
CDK5RAP1Q96SZ6 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC24.3■■□□□ 1.48
CDK5RAP1Q96SZ6 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CDK5RAP1Q96SZ6 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC24.3■■□□□ 1.48
CDK5RAP1Q96SZ6 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CDK5RAP1Q96SZ6 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CDK5RAP1Q96SZ6 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.29■■□□□ 1.48
CDK5RAP1Q96SZ6 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CDK5RAP1Q96SZ6 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC24.29■■□□□ 1.48
CDK5RAP1Q96SZ6 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC24.29■■□□□ 1.48
CDK5RAP1Q96SZ6 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
CDK5RAP1Q96SZ6 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CDK5RAP1Q96SZ6 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC24.29■■□□□ 1.48
CDK5RAP1Q96SZ6 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
CDK5RAP1Q96SZ6 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CDK5RAP1Q96SZ6 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CDK5RAP1Q96SZ6 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC24.28■■□□□ 1.48
CDK5RAP1Q96SZ6 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
CDK5RAP1Q96SZ6 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CDK5RAP1Q96SZ6 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC24.27■■□□□ 1.48
CDK5RAP1Q96SZ6 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
CDK5RAP1Q96SZ6 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC24.27■■□□□ 1.48
CDK5RAP1Q96SZ6 LBH-205ENST00000407930 756 ntTSL 2 BASIC24.26■■□□□ 1.47
CDK5RAP1Q96SZ6 SENP5-202ENST00000419026 973 ntTSL 3 BASIC24.26■■□□□ 1.47
CDK5RAP1Q96SZ6 KRT16P3-201ENST00000439127 1283 ntBASIC24.26■■□□□ 1.47
CDK5RAP1Q96SZ6 TSPY9P-201ENST00000440215 945 ntBASIC24.26■■□□□ 1.47
CDK5RAP1Q96SZ6 TSPY11P-201ENST00000442607 1045 ntBASIC24.26■■□□□ 1.47
CDK5RAP1Q96SZ6 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC24.26■■□□□ 1.47
CDK5RAP1Q96SZ6 UNC93B8-201ENST00000511903 705 ntBASIC24.26■■□□□ 1.47
CDK5RAP1Q96SZ6 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC24.26■■□□□ 1.47
CDK5RAP1Q96SZ6 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CDK5RAP1Q96SZ6 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC24.26■■□□□ 1.47
CDK5RAP1Q96SZ6 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CDK5RAP1Q96SZ6 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
CDK5RAP1Q96SZ6 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC24.25■■□□□ 1.47
CDK5RAP1Q96SZ6 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC24.25■■□□□ 1.47
CDK5RAP1Q96SZ6 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC24.25■■□□□ 1.47
CDK5RAP1Q96SZ6 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CDK5RAP1Q96SZ6 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CDK5RAP1Q96SZ6 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC24.25■■□□□ 1.47
CDK5RAP1Q96SZ6 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CDK5RAP1Q96SZ6 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
CDK5RAP1Q96SZ6 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CDK5RAP1Q96SZ6 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CDK5RAP1Q96SZ6 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC24.24■■□□□ 1.47
CDK5RAP1Q96SZ6 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC24.24■■□□□ 1.47
CDK5RAP1Q96SZ6 GRAMD4P7-201ENST00000578182 1232 ntBASIC24.24■■□□□ 1.47
CDK5RAP1Q96SZ6 LSM7-203ENST00000585409 512 ntTSL 2 BASIC24.24■■□□□ 1.47
CDK5RAP1Q96SZ6 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CDK5RAP1Q96SZ6 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC24.24■■□□□ 1.47
CDK5RAP1Q96SZ6 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC24.23■■□□□ 1.47
CDK5RAP1Q96SZ6 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
CDK5RAP1Q96SZ6 MTDHP2-201ENST00000601468 714 ntBASIC24.23■■□□□ 1.47
CDK5RAP1Q96SZ6 LSR-205ENST00000427250 1606 ntTSL 2 BASIC24.22■■□□□ 1.47
CDK5RAP1Q96SZ6 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CDK5RAP1Q96SZ6 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
CDK5RAP1Q96SZ6 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
CDK5RAP1Q96SZ6 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
CDK5RAP1Q96SZ6 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CDK5RAP1Q96SZ6 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CDK5RAP1Q96SZ6 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
CDK5RAP1Q96SZ6 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CDK5RAP1Q96SZ6 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CDK5RAP1Q96SZ6 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC24.21■■□□□ 1.47
CDK5RAP1Q96SZ6 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CDK5RAP1Q96SZ6 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC24.21■■□□□ 1.47
CDK5RAP1Q96SZ6 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
CDK5RAP1Q96SZ6 AC010997.5-201ENST00000609182 354 ntBASIC24.21■■□□□ 1.47
CDK5RAP1Q96SZ6 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
CDK5RAP1Q96SZ6 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CDK5RAP1Q96SZ6 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CDK5RAP1Q96SZ6 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
CDK5RAP1Q96SZ6 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
CDK5RAP1Q96SZ6 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC24.2■■□□□ 1.46
CDK5RAP1Q96SZ6 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
CDK5RAP1Q96SZ6 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC24.2■■□□□ 1.46
CDK5RAP1Q96SZ6 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC24.2■■□□□ 1.46
CDK5RAP1Q96SZ6 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC24.2■■□□□ 1.46
CDK5RAP1Q96SZ6 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
CDK5RAP1Q96SZ6 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CDK5RAP1Q96SZ6 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC24.19■■□□□ 1.46
CDK5RAP1Q96SZ6 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CDK5RAP1Q96SZ6 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
CDK5RAP1Q96SZ6 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC24.19■■□□□ 1.46
CDK5RAP1Q96SZ6 CLTA-210ENST00000540080 989 ntTSL 2 BASIC24.19■■□□□ 1.46
CDK5RAP1Q96SZ6 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC24.19■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms