Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LYSMD1Q96S90 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LYSMD1Q96S90 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
LYSMD1Q96S90 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC23.35■■□□□ 1.33
LYSMD1Q96S90 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC23.35■■□□□ 1.33
LYSMD1Q96S90 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LYSMD1Q96S90 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC23.34■■□□□ 1.33
LYSMD1Q96S90 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
LYSMD1Q96S90 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LYSMD1Q96S90 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
LYSMD1Q96S90 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
LYSMD1Q96S90 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LYSMD1Q96S90 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
LYSMD1Q96S90 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
LYSMD1Q96S90 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
LYSMD1Q96S90 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
LYSMD1Q96S90 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
LYSMD1Q96S90 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
LYSMD1Q96S90 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
LYSMD1Q96S90 AF131216.4-201ENST00000638924 1588 ntBASIC23.32■■□□□ 1.32
LYSMD1Q96S90 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC23.32■■□□□ 1.32
LYSMD1Q96S90 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.32■■□□□ 1.32
LYSMD1Q96S90 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
LYSMD1Q96S90 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
LYSMD1Q96S90 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
LYSMD1Q96S90 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC23.31■■□□□ 1.32
LYSMD1Q96S90 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
LYSMD1Q96S90 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
LYSMD1Q96S90 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
LYSMD1Q96S90 Z92544.1-202ENST00000571933 1220 ntBASIC23.31■■□□□ 1.32
LYSMD1Q96S90 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
LYSMD1Q96S90 AL035685.1-201ENST00000636663 812 ntBASIC23.31■■□□□ 1.32
LYSMD1Q96S90 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
LYSMD1Q96S90 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
LYSMD1Q96S90 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
LYSMD1Q96S90 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC23.31■■□□□ 1.32
LYSMD1Q96S90 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
LYSMD1Q96S90 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
LYSMD1Q96S90 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
LYSMD1Q96S90 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
LYSMD1Q96S90 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC23.3■■□□□ 1.32
LYSMD1Q96S90 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
LYSMD1Q96S90 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
LYSMD1Q96S90 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC23.29■■□□□ 1.32
LYSMD1Q96S90 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
LYSMD1Q96S90 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.29■■□□□ 1.32
LYSMD1Q96S90 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.29■■□□□ 1.32
LYSMD1Q96S90 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC23.29■■□□□ 1.32
LYSMD1Q96S90 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC23.29■■□□□ 1.32
LYSMD1Q96S90 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
LYSMD1Q96S90 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
LYSMD1Q96S90 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC23.29■■□□□ 1.32
LYSMD1Q96S90 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC23.29■■□□□ 1.32
LYSMD1Q96S90 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
LYSMD1Q96S90 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
LYSMD1Q96S90 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC23.28■■□□□ 1.32
LYSMD1Q96S90 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
LYSMD1Q96S90 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
LYSMD1Q96S90 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
LYSMD1Q96S90 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
LYSMD1Q96S90 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.28■■□□□ 1.32
LYSMD1Q96S90 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
LYSMD1Q96S90 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
LYSMD1Q96S90 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC23.27■■□□□ 1.32
LYSMD1Q96S90 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
LYSMD1Q96S90 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.27■■□□□ 1.32
LYSMD1Q96S90 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
LYSMD1Q96S90 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
LYSMD1Q96S90 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
LYSMD1Q96S90 EED-207ENST00000528180 1745 ntTSL 5 BASIC23.27■■□□□ 1.32
LYSMD1Q96S90 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
LYSMD1Q96S90 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
LYSMD1Q96S90 AC021242.3-201ENST00000607598 1377 ntBASIC23.27■■□□□ 1.31
LYSMD1Q96S90 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC23.26■■□□□ 1.31
LYSMD1Q96S90 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.26■■□□□ 1.31
LYSMD1Q96S90 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
LYSMD1Q96S90 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
LYSMD1Q96S90 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC23.26■■□□□ 1.31
LYSMD1Q96S90 BX664725.1-201ENST00000438252 379 ntBASIC23.26■■□□□ 1.31
LYSMD1Q96S90 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC23.26■■□□□ 1.31
LYSMD1Q96S90 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
LYSMD1Q96S90 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
LYSMD1Q96S90 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
LYSMD1Q96S90 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LYSMD1Q96S90 HLA-L-211ENST00000482052 1765 ntBASIC23.25■■□□□ 1.31
LYSMD1Q96S90 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LYSMD1Q96S90 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC23.25■■□□□ 1.31
LYSMD1Q96S90 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC23.25■■□□□ 1.31
LYSMD1Q96S90 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
LYSMD1Q96S90 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
LYSMD1Q96S90 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LYSMD1Q96S90 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LYSMD1Q96S90 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LYSMD1Q96S90 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
LYSMD1Q96S90 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
LYSMD1Q96S90 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
LYSMD1Q96S90 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
LYSMD1Q96S90 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
LYSMD1Q96S90 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC23.24■■□□□ 1.31
LYSMD1Q96S90 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms