Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC30.63■■■□□ 2.49
RTF1Q92541 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC30.63■■■□□ 2.49
RTF1Q92541 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC30.63■■■□□ 2.49
RTF1Q92541 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
RTF1Q92541 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC30.63■■■□□ 2.49
RTF1Q92541 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC30.63■■■□□ 2.49
RTF1Q92541 SLC6A10P-202ENST00000431994 2058 ntBASIC30.62■■■□□ 2.49
RTF1Q92541 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC30.62■■■□□ 2.49
RTF1Q92541 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC30.62■■■□□ 2.49
RTF1Q92541 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
RTF1Q92541 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC30.62■■■□□ 2.49
RTF1Q92541 CEBPA-AS1-201ENST00000592982 2198 ntBASIC30.61■■■□□ 2.49
RTF1Q92541 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
RTF1Q92541 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC30.61■■■□□ 2.49
RTF1Q92541 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC30.61■■■□□ 2.49
RTF1Q92541 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
RTF1Q92541 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
RTF1Q92541 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
RTF1Q92541 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC30.6■■■□□ 2.49
RTF1Q92541 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC30.6■■■□□ 2.49
RTF1Q92541 MTDHP2-201ENST00000601468 714 ntBASIC30.6■■■□□ 2.49
RTF1Q92541 AC010997.5-201ENST00000609182 354 ntBASIC30.6■■■□□ 2.49
RTF1Q92541 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC30.59■■■□□ 2.49
RTF1Q92541 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC30.59■■■□□ 2.49
RTF1Q92541 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC30.59■■■□□ 2.49
RTF1Q92541 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC30.59■■■□□ 2.49
RTF1Q92541 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
RTF1Q92541 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC30.58■■■□□ 2.49
RTF1Q92541 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC30.58■■■□□ 2.49
RTF1Q92541 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC30.58■■■□□ 2.49
RTF1Q92541 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC30.58■■■□□ 2.49
RTF1Q92541 CLTA-210ENST00000540080 989 ntTSL 2 BASIC30.58■■■□□ 2.49
RTF1Q92541 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
RTF1Q92541 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC30.58■■■□□ 2.49
RTF1Q92541 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
RTF1Q92541 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
RTF1Q92541 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
RTF1Q92541 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC30.57■■■□□ 2.48
RTF1Q92541 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC30.57■■■□□ 2.48
RTF1Q92541 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
RTF1Q92541 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC30.56■■■□□ 2.48
RTF1Q92541 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC30.56■■■□□ 2.48
RTF1Q92541 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
RTF1Q92541 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC30.55■■■□□ 2.48
RTF1Q92541 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC30.55■■■□□ 2.48
RTF1Q92541 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
RTF1Q92541 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
RTF1Q92541 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC30.54■■■□□ 2.48
RTF1Q92541 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
RTF1Q92541 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC30.54■■■□□ 2.48
RTF1Q92541 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
RTF1Q92541 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
RTF1Q92541 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
RTF1Q92541 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC30.52■■■□□ 2.48
RTF1Q92541 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC30.52■■■□□ 2.48
RTF1Q92541 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC30.52■■■□□ 2.48
RTF1Q92541 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
RTF1Q92541 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
RTF1Q92541 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC30.51■■■□□ 2.47
RTF1Q92541 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
RTF1Q92541 LBH-205ENST00000407930 756 ntTSL 2 BASIC30.51■■■□□ 2.47
RTF1Q92541 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC30.51■■■□□ 2.47
RTF1Q92541 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC30.51■■■□□ 2.47
RTF1Q92541 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
RTF1Q92541 MIR6724-1-201ENST00000616420 92 ntBASIC30.5■■■□□ 2.47
RTF1Q92541 MIR6724-2-201ENST00000616483 92 ntBASIC30.5■■■□□ 2.47
RTF1Q92541 MIR6724-4-201ENST00000617390 92 ntBASIC30.5■■■□□ 2.47
RTF1Q92541 MIR6724-3-201ENST00000622482 92 ntBASIC30.5■■■□□ 2.47
RTF1Q92541 EXOG-217ENST00000630638 197 ntTSL 5 BASIC30.5■■■□□ 2.47
RTF1Q92541 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC30.49■■■□□ 2.47
RTF1Q92541 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
RTF1Q92541 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC30.49■■■□□ 2.47
RTF1Q92541 LSM4-201ENST00000252816 986 ntTSL 2 BASIC30.49■■■□□ 2.47
RTF1Q92541 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC30.49■■■□□ 2.47
RTF1Q92541 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC30.49■■■□□ 2.47
RTF1Q92541 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
RTF1Q92541 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
RTF1Q92541 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
RTF1Q92541 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC30.48■■■□□ 2.47
RTF1Q92541 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
RTF1Q92541 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC30.48■■■□□ 2.47
RTF1Q92541 SNX5-217ENST00000606557 1087 ntBASIC30.48■■■□□ 2.47
RTF1Q92541 AC008406.3-201ENST00000620001 1374 ntBASIC30.48■■■□□ 2.47
RTF1Q92541 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
RTF1Q92541 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
RTF1Q92541 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
RTF1Q92541 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
RTF1Q92541 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
RTF1Q92541 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
RTF1Q92541 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC30.46■■■□□ 2.47
RTF1Q92541 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
RTF1Q92541 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC30.45■■■□□ 2.47
RTF1Q92541 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
RTF1Q92541 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
RTF1Q92541 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
RTF1Q92541 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
RTF1Q92541 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC30.44■■■□□ 2.46
RTF1Q92541 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
RTF1Q92541 MIR6089-201ENST00000616698 64 ntBASIC30.44■■■□□ 2.46
RTF1Q92541 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC30.44■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms