Protein–RNA interactions for Protein: Q8TF05

PPP4R1, Serine/threonine-protein phosphatase 4 regulatory subunit 1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1Q8TF05 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
PPP4R1Q8TF05 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
PPP4R1Q8TF05 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
PPP4R1Q8TF05 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PPP4R1Q8TF05 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC23.23■■□□□ 1.31
PPP4R1Q8TF05 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PPP4R1Q8TF05 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PPP4R1Q8TF05 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.23■■□□□ 1.31
PPP4R1Q8TF05 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PPP4R1Q8TF05 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PPP4R1Q8TF05 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
PPP4R1Q8TF05 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC23.22■■□□□ 1.31
PPP4R1Q8TF05 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
PPP4R1Q8TF05 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PPP4R1Q8TF05 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PPP4R1Q8TF05 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC23.22■■□□□ 1.31
PPP4R1Q8TF05 ECEL1P2-201ENST00000461596 1295 ntBASIC23.22■■□□□ 1.31
PPP4R1Q8TF05 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
PPP4R1Q8TF05 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PPP4R1Q8TF05 U85056.1-201ENST00000616429 682 ntBASIC23.22■■□□□ 1.31
PPP4R1Q8TF05 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
PPP4R1Q8TF05 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PPP4R1Q8TF05 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
PPP4R1Q8TF05 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
PPP4R1Q8TF05 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PPP4R1Q8TF05 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
PPP4R1Q8TF05 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC23.21■■□□□ 1.31
PPP4R1Q8TF05 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
PPP4R1Q8TF05 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PPP4R1Q8TF05 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC23.21■■□□□ 1.31
PPP4R1Q8TF05 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PPP4R1Q8TF05 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PPP4R1Q8TF05 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
PPP4R1Q8TF05 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PPP4R1Q8TF05 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC23.2■■□□□ 1.3
PPP4R1Q8TF05 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
PPP4R1Q8TF05 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
PPP4R1Q8TF05 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.2■■□□□ 1.3
PPP4R1Q8TF05 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PPP4R1Q8TF05 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC23.19■■□□□ 1.3
PPP4R1Q8TF05 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC23.19■■□□□ 1.3
PPP4R1Q8TF05 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
PPP4R1Q8TF05 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PPP4R1Q8TF05 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.19■■□□□ 1.3
PPP4R1Q8TF05 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
PPP4R1Q8TF05 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
PPP4R1Q8TF05 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PPP4R1Q8TF05 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC23.19■■□□□ 1.3
PPP4R1Q8TF05 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.18■■□□□ 1.3
PPP4R1Q8TF05 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PPP4R1Q8TF05 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC23.18■■□□□ 1.3
PPP4R1Q8TF05 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PPP4R1Q8TF05 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
PPP4R1Q8TF05 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
PPP4R1Q8TF05 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
PPP4R1Q8TF05 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PPP4R1Q8TF05 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PPP4R1Q8TF05 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PPP4R1Q8TF05 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PPP4R1Q8TF05 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PPP4R1Q8TF05 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PPP4R1Q8TF05 AC068473.5-201ENST00000616428 2072 ntBASIC23.17■■□□□ 1.3
PPP4R1Q8TF05 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
PPP4R1Q8TF05 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.17■■□□□ 1.3
PPP4R1Q8TF05 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PPP4R1Q8TF05 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PPP4R1Q8TF05 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PPP4R1Q8TF05 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PPP4R1Q8TF05 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.16■■□□□ 1.3
PPP4R1Q8TF05 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC23.16■■□□□ 1.3
PPP4R1Q8TF05 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC23.16■■□□□ 1.3
PPP4R1Q8TF05 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
PPP4R1Q8TF05 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
PPP4R1Q8TF05 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
PPP4R1Q8TF05 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
PPP4R1Q8TF05 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PPP4R1Q8TF05 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
PPP4R1Q8TF05 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PPP4R1Q8TF05 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PPP4R1Q8TF05 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC23.15■■□□□ 1.3
PPP4R1Q8TF05 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
PPP4R1Q8TF05 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.15■■□□□ 1.3
PPP4R1Q8TF05 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PPP4R1Q8TF05 AL033527.3-201ENST00000566366 1196 ntBASIC23.15■■□□□ 1.3
PPP4R1Q8TF05 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
PPP4R1Q8TF05 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC23.14■■□□□ 1.3
PPP4R1Q8TF05 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
PPP4R1Q8TF05 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.14■■□□□ 1.29
PPP4R1Q8TF05 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
PPP4R1Q8TF05 RP9P-202ENST00000450133 1212 ntBASIC23.14■■□□□ 1.29
PPP4R1Q8TF05 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC23.14■■□□□ 1.29
PPP4R1Q8TF05 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
PPP4R1Q8TF05 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
PPP4R1Q8TF05 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
PPP4R1Q8TF05 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
PPP4R1Q8TF05 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
PPP4R1Q8TF05 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.13■■□□□ 1.29
PPP4R1Q8TF05 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PPP4R1Q8TF05 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PPP4R1Q8TF05 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms