Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC28.15■■■□□ 2.1
SMC1BQ8NDV3 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
SMC1BQ8NDV3 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
SMC1BQ8NDV3 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
SMC1BQ8NDV3 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.1
SMC1BQ8NDV3 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
SMC1BQ8NDV3 SERBP1P1-201ENST00000396021 1160 ntBASIC28.14■■■□□ 2.1
SMC1BQ8NDV3 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
SMC1BQ8NDV3 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC28.14■■■□□ 2.09
SMC1BQ8NDV3 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SMC1BQ8NDV3 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC28.13■■■□□ 2.09
SMC1BQ8NDV3 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SMC1BQ8NDV3 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SMC1BQ8NDV3 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
SMC1BQ8NDV3 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
SMC1BQ8NDV3 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC28.13■■■□□ 2.09
SMC1BQ8NDV3 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC28.12■■■□□ 2.09
SMC1BQ8NDV3 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SMC1BQ8NDV3 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
SMC1BQ8NDV3 VPS53-216ENST00000574029 585 ntTSL 4 BASIC28.12■■■□□ 2.09
SMC1BQ8NDV3 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC28.12■■■□□ 2.09
SMC1BQ8NDV3 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC28.11■■■□□ 2.09
SMC1BQ8NDV3 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SMC1BQ8NDV3 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
SMC1BQ8NDV3 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC28.11■■■□□ 2.09
SMC1BQ8NDV3 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
SMC1BQ8NDV3 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
SMC1BQ8NDV3 AC011298.3-201ENST00000615796 283 ntBASIC28.1■■■□□ 2.09
SMC1BQ8NDV3 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
SMC1BQ8NDV3 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
SMC1BQ8NDV3 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
SMC1BQ8NDV3 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC28.09■■■□□ 2.09
SMC1BQ8NDV3 YBX1P1-201ENST00000445822 960 ntBASIC28.09■■■□□ 2.09
SMC1BQ8NDV3 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC28.08■■■□□ 2.09
SMC1BQ8NDV3 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SMC1BQ8NDV3 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC28.08■■■□□ 2.09
SMC1BQ8NDV3 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC28.08■■■□□ 2.09
SMC1BQ8NDV3 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC28.08■■■□□ 2.08
SMC1BQ8NDV3 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SMC1BQ8NDV3 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC28.07■■■□□ 2.08
SMC1BQ8NDV3 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
SMC1BQ8NDV3 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SMC1BQ8NDV3 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
SMC1BQ8NDV3 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC28.07■■■□□ 2.08
SMC1BQ8NDV3 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC28.07■■■□□ 2.08
SMC1BQ8NDV3 AL031602.1-201ENST00000633169 911 ntBASIC28.07■■■□□ 2.08
SMC1BQ8NDV3 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
SMC1BQ8NDV3 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC28.07■■■□□ 2.08
SMC1BQ8NDV3 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC28.07■■■□□ 2.08
SMC1BQ8NDV3 ABHD17AP1-201ENST00000358206 933 ntBASIC28.06■■■□□ 2.08
SMC1BQ8NDV3 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
SMC1BQ8NDV3 DUX4L2-201ENST00000561772 1275 ntBASIC28.06■■■□□ 2.08
SMC1BQ8NDV3 AL138724.1-201ENST00000606771 1088 ntBASIC28.06■■■□□ 2.08
SMC1BQ8NDV3 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
SMC1BQ8NDV3 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC28.06■■■□□ 2.08
SMC1BQ8NDV3 DUX4L6-201ENST00000626483 1275 ntBASIC28.06■■■□□ 2.08
SMC1BQ8NDV3 DUX4L1-201ENST00000627662 1275 ntBASIC28.06■■■□□ 2.08
SMC1BQ8NDV3 DUX4L8-201ENST00000629013 1275 ntBASIC28.06■■■□□ 2.08
SMC1BQ8NDV3 DUX4L3-201ENST00000630187 1275 ntBASIC28.06■■■□□ 2.08
SMC1BQ8NDV3 DUX4L7-201ENST00000630678 1275 ntBASIC28.06■■■□□ 2.08
SMC1BQ8NDV3 DUX4L5-201ENST00000630834 1275 ntBASIC28.06■■■□□ 2.08
SMC1BQ8NDV3 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC28.06■■■□□ 2.08
SMC1BQ8NDV3 PTCHD3P2-201ENST00000424937 1205 ntBASIC28.05■■■□□ 2.08
SMC1BQ8NDV3 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC28.05■■■□□ 2.08
SMC1BQ8NDV3 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC28.05■■■□□ 2.08
SMC1BQ8NDV3 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC28.05■■■□□ 2.08
SMC1BQ8NDV3 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC28.04■■■□□ 2.08
SMC1BQ8NDV3 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC28.04■■■□□ 2.08
SMC1BQ8NDV3 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC28.04■■■□□ 2.08
SMC1BQ8NDV3 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC28.04■■■□□ 2.08
SMC1BQ8NDV3 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SMC1BQ8NDV3 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SMC1BQ8NDV3 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SMC1BQ8NDV3 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SMC1BQ8NDV3 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC28.02■■■□□ 2.08
SMC1BQ8NDV3 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC28.02■■■□□ 2.08
SMC1BQ8NDV3 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
SMC1BQ8NDV3 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC28.02■■■□□ 2.08
SMC1BQ8NDV3 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC28.02■■■□□ 2.08
SMC1BQ8NDV3 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
SMC1BQ8NDV3 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
SMC1BQ8NDV3 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC28.02■■■□□ 2.08
SMC1BQ8NDV3 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC28.02■■■□□ 2.08
SMC1BQ8NDV3 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC28.01■■■□□ 2.07
SMC1BQ8NDV3 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SMC1BQ8NDV3 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC28.01■■■□□ 2.07
SMC1BQ8NDV3 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SMC1BQ8NDV3 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC28■■■□□ 2.07
SMC1BQ8NDV3 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC28■■■□□ 2.07
SMC1BQ8NDV3 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC27.99■■■□□ 2.07
SMC1BQ8NDV3 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC27.99■■■□□ 2.07
SMC1BQ8NDV3 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
SMC1BQ8NDV3 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC27.99■■■□□ 2.07
SMC1BQ8NDV3 MPST-208ENST00000628507 698 ntTSL 5 BASIC27.99■■■□□ 2.07
SMC1BQ8NDV3 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC27.99■■■□□ 2.07
SMC1BQ8NDV3 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC27.99■■■□□ 2.07
SMC1BQ8NDV3 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SMC1BQ8NDV3 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC27.98■■■□□ 2.07
SMC1BQ8NDV3 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SMC1BQ8NDV3 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms