Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC24.44■■□□□ 1.5
RNF43Q68DV7 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
RNF43Q68DV7 AC008406.3-201ENST00000620001 1374 ntBASIC24.43■■□□□ 1.5
RNF43Q68DV7 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
RNF43Q68DV7 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
RNF43Q68DV7 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RNF43Q68DV7 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RNF43Q68DV7 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC24.42■■□□□ 1.5
RNF43Q68DV7 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RNF43Q68DV7 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
RNF43Q68DV7 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC24.42■■□□□ 1.5
RNF43Q68DV7 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
RNF43Q68DV7 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RNF43Q68DV7 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC24.41■■□□□ 1.5
RNF43Q68DV7 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
RNF43Q68DV7 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC24.41■■□□□ 1.5
RNF43Q68DV7 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
RNF43Q68DV7 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RNF43Q68DV7 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RNF43Q68DV7 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
RNF43Q68DV7 AC010501.1-201ENST00000606270 1962 ntBASIC24.4■■□□□ 1.5
RNF43Q68DV7 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RNF43Q68DV7 KRT18P24-201ENST00000344739 1156 ntBASIC24.4■■□□□ 1.5
RNF43Q68DV7 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC24.4■■□□□ 1.5
RNF43Q68DV7 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RNF43Q68DV7 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
RNF43Q68DV7 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
RNF43Q68DV7 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
RNF43Q68DV7 AC239859.2-201ENST00000444165 318 ntBASIC24.39■■□□□ 1.49
RNF43Q68DV7 RNF146-205ENST00000477776 762 ntTSL 3 BASIC24.39■■□□□ 1.49
RNF43Q68DV7 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC24.39■■□□□ 1.49
RNF43Q68DV7 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC24.38■■□□□ 1.49
RNF43Q68DV7 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
RNF43Q68DV7 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
RNF43Q68DV7 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC24.38■■□□□ 1.49
RNF43Q68DV7 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
RNF43Q68DV7 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC24.38■■□□□ 1.49
RNF43Q68DV7 TK2-216ENST00000564917 1156 ntTSL 3 BASIC24.38■■□□□ 1.49
RNF43Q68DV7 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC24.38■■□□□ 1.49
RNF43Q68DV7 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
RNF43Q68DV7 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
RNF43Q68DV7 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
RNF43Q68DV7 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
RNF43Q68DV7 LSM7-203ENST00000585409 512 ntTSL 2 BASIC24.37■■□□□ 1.49
RNF43Q68DV7 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.49
RNF43Q68DV7 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC24.36■■□□□ 1.49
RNF43Q68DV7 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
RNF43Q68DV7 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC24.35■■□□□ 1.49
RNF43Q68DV7 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RNF43Q68DV7 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC24.35■■□□□ 1.49
RNF43Q68DV7 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
RNF43Q68DV7 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RNF43Q68DV7 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RNF43Q68DV7 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RNF43Q68DV7 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RNF43Q68DV7 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC24.34■■□□□ 1.49
RNF43Q68DV7 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC24.34■■□□□ 1.49
RNF43Q68DV7 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC24.34■■□□□ 1.49
RNF43Q68DV7 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC24.34■■□□□ 1.49
RNF43Q68DV7 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC24.34■■□□□ 1.49
RNF43Q68DV7 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RNF43Q68DV7 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RNF43Q68DV7 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
RNF43Q68DV7 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RNF43Q68DV7 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
RNF43Q68DV7 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
RNF43Q68DV7 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RNF43Q68DV7 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
RNF43Q68DV7 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC24.33■■□□□ 1.49
RNF43Q68DV7 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RNF43Q68DV7 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
RNF43Q68DV7 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC24.33■■□□□ 1.48
RNF43Q68DV7 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
RNF43Q68DV7 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
RNF43Q68DV7 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
RNF43Q68DV7 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
RNF43Q68DV7 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
RNF43Q68DV7 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RNF43Q68DV7 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RNF43Q68DV7 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
RNF43Q68DV7 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RNF43Q68DV7 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RNF43Q68DV7 AC120024.1-201ENST00000562672 995 ntBASIC24.31■■□□□ 1.48
RNF43Q68DV7 GRAMD4P7-201ENST00000578182 1232 ntBASIC24.31■■□□□ 1.48
RNF43Q68DV7 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RNF43Q68DV7 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC24.31■■□□□ 1.48
RNF43Q68DV7 AC142381.3-201ENST00000568208 1670 ntBASIC24.3■■□□□ 1.48
RNF43Q68DV7 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RNF43Q68DV7 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RNF43Q68DV7 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RNF43Q68DV7 AC097639.1-201ENST00000565519 1891 ntBASIC24.3■■□□□ 1.48
RNF43Q68DV7 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RNF43Q68DV7 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC24.3■■□□□ 1.48
RNF43Q68DV7 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RNF43Q68DV7 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC24.29■■□□□ 1.48
RNF43Q68DV7 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RNF43Q68DV7 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RNF43Q68DV7 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
RNF43Q68DV7 Z92544.1-202ENST00000571933 1220 ntBASIC24.29■■□□□ 1.48
RNF43Q68DV7 PREB-202ENST00000406567 1910 ntTSL 5 BASIC24.29■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms