Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
NCBP3Q53F19 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC30.65■■■□□ 2.5
NCBP3Q53F19 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC30.65■■■□□ 2.5
NCBP3Q53F19 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC30.64■■■□□ 2.5
NCBP3Q53F19 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
NCBP3Q53F19 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC30.63■■■□□ 2.49
NCBP3Q53F19 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC30.63■■■□□ 2.49
NCBP3Q53F19 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC30.63■■■□□ 2.49
NCBP3Q53F19 AC120024.1-201ENST00000562672 995 ntBASIC30.63■■■□□ 2.49
NCBP3Q53F19 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC30.63■■■□□ 2.49
NCBP3Q53F19 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
NCBP3Q53F19 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
NCBP3Q53F19 AC141586.4-201ENST00000624558 1573 ntBASIC30.62■■■□□ 2.49
NCBP3Q53F19 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC30.62■■■□□ 2.49
NCBP3Q53F19 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
NCBP3Q53F19 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
NCBP3Q53F19 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
NCBP3Q53F19 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC30.6■■■□□ 2.49
NCBP3Q53F19 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC30.6■■■□□ 2.49
NCBP3Q53F19 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC30.6■■■□□ 2.49
NCBP3Q53F19 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
NCBP3Q53F19 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC30.59■■■□□ 2.49
NCBP3Q53F19 NIFKP4-201ENST00000567275 1192 ntBASIC30.59■■■□□ 2.49
NCBP3Q53F19 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC30.59■■■□□ 2.49
NCBP3Q53F19 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC30.59■■■□□ 2.49
NCBP3Q53F19 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
NCBP3Q53F19 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
NCBP3Q53F19 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
NCBP3Q53F19 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC30.58■■■□□ 2.49
NCBP3Q53F19 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
NCBP3Q53F19 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
NCBP3Q53F19 GAK-223ENST00000628912 497 ntTSL 5 BASIC30.58■■■□□ 2.49
NCBP3Q53F19 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
NCBP3Q53F19 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.49
NCBP3Q53F19 HLA-L-211ENST00000482052 1765 ntBASIC30.57■■■□□ 2.48
NCBP3Q53F19 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
NCBP3Q53F19 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
NCBP3Q53F19 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC30.57■■■□□ 2.48
NCBP3Q53F19 AC103724.3-201ENST00000564481 992 ntBASIC30.57■■■□□ 2.48
NCBP3Q53F19 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
NCBP3Q53F19 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
NCBP3Q53F19 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
NCBP3Q53F19 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
NCBP3Q53F19 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
NCBP3Q53F19 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC30.56■■■□□ 2.48
NCBP3Q53F19 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC30.56■■■□□ 2.48
NCBP3Q53F19 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
NCBP3Q53F19 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC30.56■■■□□ 2.48
NCBP3Q53F19 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
NCBP3Q53F19 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC30.56■■■□□ 2.48
NCBP3Q53F19 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC30.56■■■□□ 2.48
NCBP3Q53F19 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
NCBP3Q53F19 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC30.56■■■□□ 2.48
NCBP3Q53F19 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC30.56■■■□□ 2.48
NCBP3Q53F19 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC30.55■■■□□ 2.48
NCBP3Q53F19 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC30.55■■■□□ 2.48
NCBP3Q53F19 LINC00543-201ENST00000567234 1845 ntBASIC30.55■■■□□ 2.48
NCBP3Q53F19 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC30.55■■■□□ 2.48
NCBP3Q53F19 AL161729.1-201ENST00000604104 1402 ntBASIC30.55■■■□□ 2.48
NCBP3Q53F19 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
NCBP3Q53F19 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
NCBP3Q53F19 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
NCBP3Q53F19 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC30.54■■■□□ 2.48
NCBP3Q53F19 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
NCBP3Q53F19 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
NCBP3Q53F19 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC30.54■■■□□ 2.48
NCBP3Q53F19 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
NCBP3Q53F19 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
NCBP3Q53F19 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC30.52■■■□□ 2.48
NCBP3Q53F19 YBX1P4-201ENST00000392794 808 ntBASIC30.52■■■□□ 2.48
NCBP3Q53F19 MIR4281-201ENST00000580852 62 ntBASIC30.52■■■□□ 2.48
NCBP3Q53F19 THA1P-201ENST00000590384 1145 ntBASIC30.52■■■□□ 2.48
NCBP3Q53F19 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
NCBP3Q53F19 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
NCBP3Q53F19 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
NCBP3Q53F19 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
NCBP3Q53F19 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
NCBP3Q53F19 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
NCBP3Q53F19 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC30.5■■■□□ 2.47
NCBP3Q53F19 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
NCBP3Q53F19 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
NCBP3Q53F19 PREB-202ENST00000406567 1910 ntTSL 5 BASIC30.5■■■□□ 2.47
NCBP3Q53F19 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
NCBP3Q53F19 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
NCBP3Q53F19 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC30.49■■■□□ 2.47
NCBP3Q53F19 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
NCBP3Q53F19 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC30.49■■■□□ 2.47
NCBP3Q53F19 AF131216.4-201ENST00000638924 1588 ntBASIC30.49■■■□□ 2.47
NCBP3Q53F19 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
NCBP3Q53F19 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC30.48■■■□□ 2.47
NCBP3Q53F19 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
NCBP3Q53F19 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
NCBP3Q53F19 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC30.48■■■□□ 2.47
NCBP3Q53F19 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
NCBP3Q53F19 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC30.48■■■□□ 2.47
NCBP3Q53F19 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NCBP3Q53F19 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NCBP3Q53F19 TK2-216ENST00000564917 1156 ntTSL 3 BASIC30.47■■■□□ 2.47
NCBP3Q53F19 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NCBP3Q53F19 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms