Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
SHROOM1Q2M3G4 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC27.6■■■□□ 2.01
SHROOM1Q2M3G4 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
SHROOM1Q2M3G4 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
SHROOM1Q2M3G4 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
SHROOM1Q2M3G4 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
SHROOM1Q2M3G4 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC27.58■■■□□ 2.01
SHROOM1Q2M3G4 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
SHROOM1Q2M3G4 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC27.58■■■□□ 2
SHROOM1Q2M3G4 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC27.57■■■□□ 2
SHROOM1Q2M3G4 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC27.57■■■□□ 2
SHROOM1Q2M3G4 AL136116.3-201ENST00000402907 1138 ntBASIC27.57■■■□□ 2
SHROOM1Q2M3G4 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC27.56■■■□□ 2
SHROOM1Q2M3G4 CD72-202ENST00000378430 585 ntTSL 3 BASIC27.56■■■□□ 2
SHROOM1Q2M3G4 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC27.56■■■□□ 2
SHROOM1Q2M3G4 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC27.56■■■□□ 2
SHROOM1Q2M3G4 EXOG-217ENST00000630638 197 ntTSL 5 BASIC27.56■■■□□ 2
SHROOM1Q2M3G4 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
SHROOM1Q2M3G4 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC27.56■■■□□ 2
SHROOM1Q2M3G4 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC27.55■■■□□ 2
SHROOM1Q2M3G4 MIR638-201ENST00000385237 100 ntBASIC27.55■■■□□ 2
SHROOM1Q2M3G4 CLTA-206ENST00000466396 695 ntTSL 2 BASIC27.55■■■□□ 2
SHROOM1Q2M3G4 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC27.55■■■□□ 2
SHROOM1Q2M3G4 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC27.55■■■□□ 2
SHROOM1Q2M3G4 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC27.55■■■□□ 2
SHROOM1Q2M3G4 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
SHROOM1Q2M3G4 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
SHROOM1Q2M3G4 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SHROOM1Q2M3G4 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SHROOM1Q2M3G4 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC27.54■■■□□ 2
SHROOM1Q2M3G4 AL512631.2-201ENST00000604634 923 ntBASIC27.54■■■□□ 2
SHROOM1Q2M3G4 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC27.54■■■□□ 2
SHROOM1Q2M3G4 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC27.53■■■□□ 2
SHROOM1Q2M3G4 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC27.53■■■□□ 2
SHROOM1Q2M3G4 SNX5-217ENST00000606557 1087 ntBASIC27.53■■■□□ 2
SHROOM1Q2M3G4 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC27.53■■■□□ 2
SHROOM1Q2M3G4 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC27.52■■■□□ 2
SHROOM1Q2M3G4 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC27.52■■■□□ 2
SHROOM1Q2M3G4 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
SHROOM1Q2M3G4 NALT1-201ENST00000429224 738 ntTSL 5 BASIC27.51■■□□□ 1.99
SHROOM1Q2M3G4 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.99
SHROOM1Q2M3G4 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
SHROOM1Q2M3G4 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
SHROOM1Q2M3G4 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHROOM1Q2M3G4 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
SHROOM1Q2M3G4 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHROOM1Q2M3G4 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
SHROOM1Q2M3G4 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC27.48■■□□□ 1.99
SHROOM1Q2M3G4 AC110285.6-201ENST00000617652 491 ntBASIC27.48■■□□□ 1.99
SHROOM1Q2M3G4 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC27.48■■□□□ 1.99
SHROOM1Q2M3G4 RALB-208ENST00000631312 311 ntTSL 5 BASIC27.48■■□□□ 1.99
SHROOM1Q2M3G4 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC27.48■■□□□ 1.99
SHROOM1Q2M3G4 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
SHROOM1Q2M3G4 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
SHROOM1Q2M3G4 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
SHROOM1Q2M3G4 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
SHROOM1Q2M3G4 AK3-203ENST00000447596 705 ntTSL 2 BASIC27.47■■□□□ 1.99
SHROOM1Q2M3G4 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC27.47■■□□□ 1.99
SHROOM1Q2M3G4 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC27.47■■□□□ 1.99
SHROOM1Q2M3G4 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
SHROOM1Q2M3G4 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC27.47■■□□□ 1.99
SHROOM1Q2M3G4 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC27.46■■□□□ 1.99
SHROOM1Q2M3G4 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC27.46■■□□□ 1.99
SHROOM1Q2M3G4 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC27.46■■□□□ 1.99
SHROOM1Q2M3G4 AL356740.2-201ENST00000601559 647 ntBASIC27.46■■□□□ 1.99
SHROOM1Q2M3G4 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC27.46■■□□□ 1.99
SHROOM1Q2M3G4 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC27.46■■□□□ 1.99
SHROOM1Q2M3G4 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SHROOM1Q2M3G4 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SHROOM1Q2M3G4 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC27.45■■□□□ 1.99
SHROOM1Q2M3G4 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
SHROOM1Q2M3G4 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
SHROOM1Q2M3G4 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC27.45■■□□□ 1.98
SHROOM1Q2M3G4 AL139246.5-201ENST00000606645 996 ntBASIC27.45■■□□□ 1.98
SHROOM1Q2M3G4 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC27.45■■□□□ 1.98
SHROOM1Q2M3G4 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC27.45■■□□□ 1.98
SHROOM1Q2M3G4 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
SHROOM1Q2M3G4 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM1Q2M3G4 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM1Q2M3G4 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC27.44■■□□□ 1.98
SHROOM1Q2M3G4 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM1Q2M3G4 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM1Q2M3G4 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM1Q2M3G4 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC27.44■■□□□ 1.98
SHROOM1Q2M3G4 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM1Q2M3G4 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
SHROOM1Q2M3G4 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC27.43■■□□□ 1.98
SHROOM1Q2M3G4 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC27.43■■□□□ 1.98
SHROOM1Q2M3G4 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
SHROOM1Q2M3G4 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
SHROOM1Q2M3G4 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
SHROOM1Q2M3G4 SLC6A10P-202ENST00000431994 2058 ntBASIC27.42■■□□□ 1.98
SHROOM1Q2M3G4 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC27.42■■□□□ 1.98
SHROOM1Q2M3G4 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
SHROOM1Q2M3G4 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
SHROOM1Q2M3G4 TFPT-201ENST00000391757 774 ntTSL 5 BASIC27.41■■□□□ 1.98
SHROOM1Q2M3G4 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
SHROOM1Q2M3G4 AC096631.2-201ENST00000436136 790 ntBASIC27.41■■□□□ 1.98
SHROOM1Q2M3G4 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC27.41■■□□□ 1.98
SHROOM1Q2M3G4 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms