Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC25.81■■□□□ 1.72
PEX3P56589 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
PEX3P56589 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC25.81■■□□□ 1.72
PEX3P56589 AL035685.1-201ENST00000636663 812 ntBASIC25.81■■□□□ 1.72
PEX3P56589 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
PEX3P56589 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
PEX3P56589 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC25.81■■□□□ 1.72
PEX3P56589 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PEX3P56589 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC25.8■■□□□ 1.72
PEX3P56589 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC25.8■■□□□ 1.72
PEX3P56589 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PEX3P56589 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
PEX3P56589 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
PEX3P56589 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
PEX3P56589 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
PEX3P56589 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
PEX3P56589 LSR-205ENST00000427250 1606 ntTSL 2 BASIC25.79■■□□□ 1.72
PEX3P56589 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
PEX3P56589 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
PEX3P56589 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC25.79■■□□□ 1.72
PEX3P56589 RNF146-205ENST00000477776 762 ntTSL 3 BASIC25.79■■□□□ 1.72
PEX3P56589 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC25.79■■□□□ 1.72
PEX3P56589 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC25.79■■□□□ 1.72
PEX3P56589 MED17-227ENST00000640521 2047 ntTSL 5 BASIC25.78■■□□□ 1.72
PEX3P56589 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC25.78■■□□□ 1.72
PEX3P56589 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
PEX3P56589 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
PEX3P56589 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC25.78■■□□□ 1.72
PEX3P56589 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC25.78■■□□□ 1.72
PEX3P56589 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
PEX3P56589 AC142381.3-201ENST00000568208 1670 ntBASIC25.77■■□□□ 1.72
PEX3P56589 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC25.77■■□□□ 1.72
PEX3P56589 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
PEX3P56589 AC138932.3-201ENST00000567634 1902 ntBASIC25.77■■□□□ 1.72
PEX3P56589 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
PEX3P56589 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC25.77■■□□□ 1.72
PEX3P56589 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC25.77■■□□□ 1.72
PEX3P56589 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PEX3P56589 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.71
PEX3P56589 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC25.76■■□□□ 1.71
PEX3P56589 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
PEX3P56589 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
PEX3P56589 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PEX3P56589 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC25.75■■□□□ 1.71
PEX3P56589 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
PEX3P56589 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC25.75■■□□□ 1.71
PEX3P56589 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC25.75■■□□□ 1.71
PEX3P56589 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC25.75■■□□□ 1.71
PEX3P56589 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC25.75■■□□□ 1.71
PEX3P56589 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
PEX3P56589 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
PEX3P56589 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
PEX3P56589 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC25.74■■□□□ 1.71
PEX3P56589 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC25.74■■□□□ 1.71
PEX3P56589 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
PEX3P56589 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC25.74■■□□□ 1.71
PEX3P56589 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PEX3P56589 AC137630.3-201ENST00000607245 391 ntBASIC25.73■■□□□ 1.71
PEX3P56589 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
PEX3P56589 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
PEX3P56589 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
PEX3P56589 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC25.72■■□□□ 1.71
PEX3P56589 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC25.72■■□□□ 1.71
PEX3P56589 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
PEX3P56589 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PEX3P56589 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PEX3P56589 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
PEX3P56589 BX664725.1-201ENST00000438252 379 ntBASIC25.71■■□□□ 1.71
PEX3P56589 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PEX3P56589 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC25.71■■□□□ 1.71
PEX3P56589 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
PEX3P56589 AF131216.4-201ENST00000638924 1588 ntBASIC25.7■■□□□ 1.71
PEX3P56589 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC25.7■■□□□ 1.7
PEX3P56589 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC25.7■■□□□ 1.7
PEX3P56589 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
PEX3P56589 AC239859.2-201ENST00000444165 318 ntBASIC25.7■■□□□ 1.7
PEX3P56589 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC25.7■■□□□ 1.7
PEX3P56589 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC25.7■■□□□ 1.7
PEX3P56589 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
PEX3P56589 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
PEX3P56589 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
PEX3P56589 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC25.69■■□□□ 1.7
PEX3P56589 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PEX3P56589 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PEX3P56589 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
PEX3P56589 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
PEX3P56589 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC25.69■■□□□ 1.7
PEX3P56589 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
PEX3P56589 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC25.69■■□□□ 1.7
PEX3P56589 AP003733.4-201ENST00000623785 1697 ntBASIC25.68■■□□□ 1.7
PEX3P56589 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
PEX3P56589 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC25.68■■□□□ 1.7
PEX3P56589 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC25.68■■□□□ 1.7
PEX3P56589 Z92544.1-202ENST00000571933 1220 ntBASIC25.68■■□□□ 1.7
PEX3P56589 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
PEX3P56589 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PEX3P56589 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PEX3P56589 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
PEX3P56589 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC25.67■■□□□ 1.7
PEX3P56589 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms