Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeast

Predictions only

Length 423 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
SHP1	P34223	TRP1	YDR007W	675 nt		5.76	□□□□□ -1.49
SHP1	P34223	YPT32	YGL210W	669 nt		5.76	□□□□□ -1.49
SHP1	P34223	GAT3	YLR013W	426 nt		5.76	□□□□□ -1.49
SHP1	P34223	APM4	YOL062C	1476 nt		5.76	□□□□□ -1.49
SHP1	P34223	KEL1	YHR158C	3495 nt		5.76	□□□□□ -1.49
SHP1	P34223	APJ1	YNL077W	1587 nt		5.76	□□□□□ -1.49
SHP1	P34223	ATF1	YOR377W	1578 nt		5.76	□□□□□ -1.49
SHP1	P34223	ARO2	YGL148W	1131 nt		5.75	□□□□□ -1.49
SHP1	P34223	BGL2	YGR282C	942 nt		5.75	□□□□□ -1.49
SHP1	P34223	CBT1	YKL208W	816 nt		5.75	□□□□□ -1.49
SHP1	P34223	UTP18	YJL069C	1785 nt		5.75	□□□□□ -1.49
SHP1	P34223	CDC10	YCR002C	969 nt		5.74	□□□□□ -1.49
SHP1	P34223	OCA1	YNL099C	717 nt		5.74	□□□□□ -1.49
SHP1	P34223	NHP6B	YBR089C-A	300 nt		5.74	□□□□□ -1.49
SHP1	P34223	PAP2	YOL115W	1755 nt		5.73	□□□□□ -1.49
SHP1	P34223	CNM67	YNL225C	1746 nt		5.73	□□□□□ -1.49
SHP1	P34223	MSS116	YDR194C	1995 nt		5.73	□□□□□ -1.49
SHP1	P34223	SSK22	YCR073C	3996 nt		5.73	□□□□□ -1.49
SHP1	P34223	ASH1	YKL185W	1767 nt		5.72	□□□□□ -1.49
SHP1	P34223	NOP8	YOL144W	1455 nt		5.72	□□□□□ -1.49
SHP1	P34223	YBL044W	YBL044W	369 nt		5.72	□□□□□ -1.49
SHP1	P34223	MPA43	YNL249C	1629 nt		5.72	□□□□□ -1.49
SHP1	P34223	ATG20	YDL113C	1923 nt		5.72	□□□□□ -1.49
SHP1	P34223	GEX1	YCL073C	1848 nt		5.71	□□□□□ -1.49
SHP1	P34223	GEX2	YKR106W	1848 nt		5.71	□□□□□ -1.49
SHP1	P34223	PAP1	YKR002W	1707 nt		5.71	□□□□□ -1.49
SHP1	P34223	CDS1	YBR029C	1374 nt		5.71	□□□□□ -1.5
SHP1	P34223	SEH1	YGL100W	1050 nt		5.71	□□□□□ -1.5
SHP1	P34223	MIM2	YLR099W-A	264 nt		5.71	□□□□□ -1.5
SHP1	P34223	YMR105W-A	YMR105W-A	195 nt		5.71	□□□□□ -1.5
SHP1	P34223	RPS19B	YNL302C	435 nt		5.71	□□□□□ -1.5
SHP1	P34223	FEX1	YOR390W	1128 nt		5.71	□□□□□ -1.5
SHP1	P34223	FEX2	YPL279C	1128 nt		5.71	□□□□□ -1.5
SHP1	P34223	KEX2	YNL238W	2445 nt		5.71	□□□□□ -1.5
SHP1	P34223	SEC12	YNR026C	1416 nt		5.71	□□□□□ -1.5
SHP1	P34223	SIR2	YDL042C	1689 nt		5.7	□□□□□ -1.5
SHP1	P34223	MND2	YIR025W	1107 nt		5.7	□□□□□ -1.5
SHP1	P34223	RCL1	YOL010W	1104 nt		5.7	□□□□□ -1.5
SHP1	P34223	DCC1	YCL016C	1143 nt		5.7	□□□□□ -1.5
SHP1	P34223	RGD1	YBR260C	2001 nt		5.7	□□□□□ -1.5
SHP1	P34223	CSC1	YLR241W	2349 nt		5.7	□□□□□ -1.5
SHP1	P34223	ARO10	YDR380W	1908 nt		5.7	□□□□□ -1.5
SHP1	P34223	AVT3	YKL146W	2079 nt		5.7	□□□□□ -1.5
SHP1	P34223	MLF3	YNL074C	1359 nt		5.69	□□□□□ -1.5
SHP1	P34223	GPM3	YOL056W	912 nt		5.69	□□□□□ -1.5
SHP1	P34223	MGR2	YPL098C	342 nt		5.69	□□□□□ -1.5
SHP1	P34223	TOM5	YPR133W-A	153 nt		5.69	□□□□□ -1.5
SHP1	P34223	SAC6	YDR129C	1929 nt		5.69	□□□□□ -1.5
SHP1	P34223	RMD9	YGL107C	1941 nt		5.69	□□□□□ -1.5
SHP1	P34223	JEM1	YJL073W	1938 nt		5.69	□□□□□ -1.5
SHP1	P34223	YFR006W	YFR006W	1608 nt		5.69	□□□□□ -1.5
SHP1	P34223	SCT1	YBL011W	2280 nt		5.69	□□□□□ -1.5
SHP1	P34223	MRC1	YCL061C	3291 nt		5.68	□□□□□ -1.5
SHP1	P34223	SCM3	YDL139C	672 nt		5.68	□□□□□ -1.5
SHP1	P34223	CHO1	YER026C	831 nt		5.68	□□□□□ -1.5
SHP1	P34223	CAB4	YGR277C	918 nt		5.68	□□□□□ -1.5
SHP1	P34223	YJL171C	YJL171C	1191 nt		5.68	□□□□□ -1.5
SHP1	P34223	CAM1	YPL048W	1248 nt		5.68	□□□□□ -1.5
SHP1	P34223	RPL21B	YPL079W	483 nt		5.68	□□□□□ -1.5
SHP1	P34223	MRL1	YPR079W	1146 nt		5.68	□□□□□ -1.5
SHP1	P34223	HFI1	YPL254W	1467 nt		5.68	□□□□□ -1.5
SHP1	P34223	DRN1	YGR093W	1524 nt		5.68	□□□□□ -1.5
SHP1	P34223	HXT3	YDR345C	1704 nt		5.68	□□□□□ -1.5
SHP1	P34223	CDC11	YJR076C	1248 nt		5.67	□□□□□ -1.5
SHP1	P34223	TAF11	YML015C	1041 nt		5.67	□□□□□ -1.5
SHP1	P34223	PFA3	YNL326C	1011 nt		5.67	□□□□□ -1.5
SHP1	P34223	RAT1	YOR048C	3021 nt		5.67	□□□□□ -1.5
SHP1	P34223	HOS2	YGL194C	1359 nt		5.67	□□□□□ -1.5
SHP1	P34223	QDR1	YIL120W	1692 nt		5.66	□□□□□ -1.5
SHP1	P34223	PSH1	YOL054W	1221 nt		5.66	□□□□□ -1.5
SHP1	P34223	CKB2	YOR039W	777 nt		5.66	□□□□□ -1.5
SHP1	P34223	VPS70	YJR126C	2436 nt		5.66	□□□□□ -1.5
SHP1	P34223	LSG1	YGL099W	1923 nt		5.66	□□□□□ -1.5
SHP1	P34223	LDB19	YOR322C	2457 nt		5.66	□□□□□ -1.5
SHP1	P34223	FAU1	YER183C	636 nt		5.65	□□□□□ -1.5
SHP1	P34223	YIR020W-A	YIR020W-A	243 nt		5.65	□□□□□ -1.5
SHP1	P34223	PEX22	YAL055W	543 nt		5.65	□□□□□ -1.5
SHP1	P34223	YMR147W	YMR147W	672 nt		5.65	□□□□□ -1.5
SHP1	P34223	YMR027W	YMR027W	1413 nt		5.65	□□□□□ -1.51
SHP1	P34223	VMA13	YPR036W	1437 nt		5.65	□□□□□ -1.51
SHP1	P34223	JIP4	YDR475C	2631 nt		5.64	□□□□□ -1.51
SHP1	P34223	PAD1	YDR538W	729 nt		5.64	□□□□□ -1.51
SHP1	P34223	RRT2	YBR246W	1164 nt		5.64	□□□□□ -1.51
SHP1	P34223	RPT4	YOR259C	1314 nt		5.64	□□□□□ -1.51
SHP1	P34223	DEF1	YKL054C	2217 nt		5.63	□□□□□ -1.51
SHP1	P34223	HXT17	YNR072W	1695 nt		5.63	□□□□□ -1.51
SHP1	P34223	SNT2	YGL131C	4212 nt		5.63	□□□□□ -1.51
SHP1	P34223	YDL023C	YDL023C	321 nt		5.63	□□□□□ -1.51
SHP1	P34223	VPS29	YHR012W	849 nt		5.63	□□□□□ -1.51
SHP1	P34223	HMT1	YBR034C	1047 nt		5.63	□□□□□ -1.51
SHP1	P34223	YPR098C	YPR098C	486 nt		5.63	□□□□□ -1.51
SHP1	P34223	VPS1	YKR001C	2115 nt		5.63	□□□□□ -1.51
SHP1	P34223	MSN2	YMR037C	2115 nt		5.63	□□□□□ -1.51
SHP1	P34223	ESC8	YOL017W	2145 nt		5.63	□□□□□ -1.51
SHP1	P34223	PRP40	YKL012W	1752 nt		5.62	□□□□□ -1.51
SHP1	P34223	GUF1	YLR289W	1938 nt		5.62	□□□□□ -1.51
SHP1	P34223	ECM2	YBR065C	1095 nt		5.62	□□□□□ -1.51
SHP1	P34223	SUB2	YDL084W	1341 nt		5.62	□□□□□ -1.51
SHP1	P34223	CLB2	YPR119W	1476 nt		5.62	□□□□□ -1.51
SHP1	P34223	YIL067C	YIL067C	2037 nt		5.62	□□□□□ -1.51

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