Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC024257.2-201ENST00000549699 147 ntBASIC30.02■■■□□ 2.4
COL5A3P25940 AL136162.1-201ENST00000607711 1078 ntBASIC30.02■■■□□ 2.4
COL5A3P25940 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC30.02■■■□□ 2.4
COL5A3P25940 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
COL5A3P25940 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
COL5A3P25940 LBH-205ENST00000407930 756 ntTSL 2 BASIC30.02■■■□□ 2.4
COL5A3P25940 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
COL5A3P25940 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC30.01■■■□□ 2.4
COL5A3P25940 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.4
COL5A3P25940 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
COL5A3P25940 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC30.01■■■□□ 2.39
COL5A3P25940 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC30.01■■■□□ 2.39
COL5A3P25940 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
COL5A3P25940 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC30■■■□□ 2.39
COL5A3P25940 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
COL5A3P25940 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
COL5A3P25940 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC30■■■□□ 2.39
COL5A3P25940 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
COL5A3P25940 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC29.99■■■□□ 2.39
COL5A3P25940 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
COL5A3P25940 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC29.99■■■□□ 2.39
COL5A3P25940 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC29.98■■■□□ 2.39
COL5A3P25940 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
COL5A3P25940 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC29.98■■■□□ 2.39
COL5A3P25940 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC29.98■■■□□ 2.39
COL5A3P25940 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
COL5A3P25940 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
COL5A3P25940 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC29.97■■■□□ 2.39
COL5A3P25940 EDA-201ENST00000338901 1233 ntBASIC29.97■■■□□ 2.39
COL5A3P25940 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
COL5A3P25940 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC29.97■■■□□ 2.39
COL5A3P25940 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC29.97■■■□□ 2.39
COL5A3P25940 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
COL5A3P25940 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC29.96■■■□□ 2.39
COL5A3P25940 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
COL5A3P25940 AP001330.3-201ENST00000520123 633 ntBASIC29.96■■■□□ 2.39
COL5A3P25940 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC29.96■■■□□ 2.39
COL5A3P25940 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC29.96■■■□□ 2.39
COL5A3P25940 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
COL5A3P25940 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC29.96■■■□□ 2.39
COL5A3P25940 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
COL5A3P25940 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
COL5A3P25940 AC105265.2-201ENST00000467189 838 ntBASIC29.96■■■□□ 2.39
COL5A3P25940 AC104564.3-201ENST00000582367 638 ntBASIC29.96■■■□□ 2.39
COL5A3P25940 SF1-220ENST00000626028 704 ntTSL 2 BASIC29.96■■■□□ 2.39
COL5A3P25940 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
COL5A3P25940 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
COL5A3P25940 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
COL5A3P25940 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC29.94■■■□□ 2.38
COL5A3P25940 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
COL5A3P25940 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
COL5A3P25940 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
COL5A3P25940 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC29.93■■■□□ 2.38
COL5A3P25940 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC29.92■■■□□ 2.38
COL5A3P25940 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
COL5A3P25940 GATM-206ENST00000558336 1522 ntTSL 2 BASIC29.92■■■□□ 2.38
COL5A3P25940 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC29.92■■■□□ 2.38
COL5A3P25940 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
COL5A3P25940 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
COL5A3P25940 MIR939-201ENST00000401314 82 ntBASIC29.92■■■□□ 2.38
COL5A3P25940 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC29.92■■■□□ 2.38
COL5A3P25940 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC29.92■■■□□ 2.38
COL5A3P25940 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
COL5A3P25940 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
COL5A3P25940 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC29.91■■■□□ 2.38
COL5A3P25940 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
COL5A3P25940 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC29.91■■■□□ 2.38
COL5A3P25940 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
COL5A3P25940 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC29.91■■■□□ 2.38
COL5A3P25940 AF213884.3-201ENST00000563833 479 ntBASIC29.91■■■□□ 2.38
COL5A3P25940 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC29.91■■■□□ 2.38
COL5A3P25940 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
COL5A3P25940 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC29.9■■■□□ 2.38
COL5A3P25940 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC29.9■■■□□ 2.38
COL5A3P25940 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC29.89■■■□□ 2.38
COL5A3P25940 PTMA-205ENST00000410064 814 ntTSL 2 BASIC29.89■■■□□ 2.38
COL5A3P25940 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
COL5A3P25940 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC29.88■■■□□ 2.37
COL5A3P25940 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
COL5A3P25940 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
COL5A3P25940 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC29.88■■■□□ 2.37
COL5A3P25940 AC097639.1-201ENST00000565519 1891 ntBASIC29.88■■■□□ 2.37
COL5A3P25940 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
COL5A3P25940 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC29.88■■■□□ 2.37
COL5A3P25940 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC29.88■■■□□ 2.37
COL5A3P25940 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC29.87■■■□□ 2.37
COL5A3P25940 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
COL5A3P25940 SRD5A1P1-201ENST00000442297 786 ntBASIC29.87■■■□□ 2.37
COL5A3P25940 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
COL5A3P25940 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
COL5A3P25940 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC29.87■■■□□ 2.37
COL5A3P25940 ERN1-208ENST00000606895 2068 ntBASIC29.87■■■□□ 2.37
COL5A3P25940 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
COL5A3P25940 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
COL5A3P25940 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC29.86■■■□□ 2.37
COL5A3P25940 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC29.86■■■□□ 2.37
COL5A3P25940 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC29.86■■■□□ 2.37
COL5A3P25940 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
COL5A3P25940 GRAMD4P4-201ENST00000613563 1115 ntBASIC29.85■■■□□ 2.37
COL5A3P25940 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms