Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
HLA-DQB2P05538 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC23.78■■□□□ 1.4
HLA-DQB2P05538 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HLA-DQB2P05538 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.78■■□□□ 1.4
HLA-DQB2P05538 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HLA-DQB2P05538 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
HLA-DQB2P05538 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
HLA-DQB2P05538 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HLA-DQB2P05538 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.77■■□□□ 1.4
HLA-DQB2P05538 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HLA-DQB2P05538 AC022616.5-201ENST00000518796 181 ntBASIC23.77■■□□□ 1.4
HLA-DQB2P05538 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.77■■□□□ 1.4
HLA-DQB2P05538 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HLA-DQB2P05538 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HLA-DQB2P05538 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC23.77■■□□□ 1.4
HLA-DQB2P05538 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
HLA-DQB2P05538 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
HLA-DQB2P05538 EED-207ENST00000528180 1745 ntTSL 5 BASIC23.76■■□□□ 1.39
HLA-DQB2P05538 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC23.76■■□□□ 1.39
HLA-DQB2P05538 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
HLA-DQB2P05538 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
HLA-DQB2P05538 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC23.75■■□□□ 1.39
HLA-DQB2P05538 AC103834.1-201ENST00000520383 144 ntBASIC23.75■■□□□ 1.39
HLA-DQB2P05538 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
HLA-DQB2P05538 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.75■■□□□ 1.39
HLA-DQB2P05538 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
HLA-DQB2P05538 KRT8P33-201ENST00000508125 1423 ntBASIC23.75■■□□□ 1.39
HLA-DQB2P05538 PREB-202ENST00000406567 1910 ntTSL 5 BASIC23.74■■□□□ 1.39
HLA-DQB2P05538 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
HLA-DQB2P05538 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
HLA-DQB2P05538 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
HLA-DQB2P05538 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC23.74■■□□□ 1.39
HLA-DQB2P05538 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
HLA-DQB2P05538 HLA-L-211ENST00000482052 1765 ntBASIC23.73■■□□□ 1.39
HLA-DQB2P05538 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC23.73■■□□□ 1.39
HLA-DQB2P05538 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
HLA-DQB2P05538 MIR4508-201ENST00000584178 70 ntBASIC23.73■■□□□ 1.39
HLA-DQB2P05538 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC23.73■■□□□ 1.39
HLA-DQB2P05538 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HLA-DQB2P05538 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
HLA-DQB2P05538 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC23.72■■□□□ 1.39
HLA-DQB2P05538 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC23.72■■□□□ 1.39
HLA-DQB2P05538 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
HLA-DQB2P05538 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
HLA-DQB2P05538 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
HLA-DQB2P05538 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
HLA-DQB2P05538 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
HLA-DQB2P05538 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
HLA-DQB2P05538 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
HLA-DQB2P05538 AC011551.1-201ENST00000614101 683 ntBASIC23.71■■□□□ 1.39
HLA-DQB2P05538 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
HLA-DQB2P05538 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.71■■□□□ 1.39
HLA-DQB2P05538 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
HLA-DQB2P05538 LINC01124-201ENST00000409786 2117 ntBASIC23.71■■□□□ 1.39
HLA-DQB2P05538 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
HLA-DQB2P05538 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
HLA-DQB2P05538 AC120024.1-201ENST00000562672 995 ntBASIC23.7■■□□□ 1.38
HLA-DQB2P05538 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.7■■□□□ 1.38
HLA-DQB2P05538 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
HLA-DQB2P05538 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC23.7■■□□□ 1.38
HLA-DQB2P05538 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
HLA-DQB2P05538 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
HLA-DQB2P05538 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC23.69■■□□□ 1.38
HLA-DQB2P05538 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
HLA-DQB2P05538 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC23.69■■□□□ 1.38
HLA-DQB2P05538 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC23.69■■□□□ 1.38
HLA-DQB2P05538 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.69■■□□□ 1.38
HLA-DQB2P05538 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HLA-DQB2P05538 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HLA-DQB2P05538 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC23.69■■□□□ 1.38
HLA-DQB2P05538 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
HLA-DQB2P05538 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC23.68■■□□□ 1.38
HLA-DQB2P05538 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC23.68■■□□□ 1.38
HLA-DQB2P05538 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC23.68■■□□□ 1.38
HLA-DQB2P05538 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
HLA-DQB2P05538 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HLA-DQB2P05538 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
HLA-DQB2P05538 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HLA-DQB2P05538 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HLA-DQB2P05538 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC23.67■■□□□ 1.38
HLA-DQB2P05538 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
HLA-DQB2P05538 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HLA-DQB2P05538 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC23.67■■□□□ 1.38
HLA-DQB2P05538 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
HLA-DQB2P05538 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DQB2P05538 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DQB2P05538 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
HLA-DQB2P05538 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DQB2P05538 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DQB2P05538 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC23.66■■□□□ 1.38
HLA-DQB2P05538 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DQB2P05538 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.66■■□□□ 1.38
HLA-DQB2P05538 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DQB2P05538 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DQB2P05538 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DQB2P05538 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DQB2P05538 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DQB2P05538 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DQB2P05538 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.65■■□□□ 1.38
HLA-DQB2P05538 KRT18P24-201ENST00000344739 1156 ntBASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms