Protein–RNA interactions for Protein: A6NCS4

NKX2-6, Homeobox protein Nkx-2.6, humanhuman

Predictions only

Length 301 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-6A6NCS4 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.79■□□□□ 0.92
NKX2-6A6NCS4 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.79■□□□□ 0.92
NKX2-6A6NCS4 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
NKX2-6A6NCS4 MIR4466-201ENST00000606121 54 ntBASIC20.79■□□□□ 0.92
NKX2-6A6NCS4 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-6A6NCS4 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-6A6NCS4 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.79■□□□□ 0.92
NKX2-6A6NCS4 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.78■□□□□ 0.92
NKX2-6A6NCS4 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
NKX2-6A6NCS4 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NKX2-6A6NCS4 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NKX2-6A6NCS4 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-6A6NCS4 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-6A6NCS4 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
NKX2-6A6NCS4 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-6A6NCS4 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.77■□□□□ 0.92
NKX2-6A6NCS4 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.77■□□□□ 0.92
NKX2-6A6NCS4 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-6A6NCS4 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
NKX2-6A6NCS4 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
NKX2-6A6NCS4 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NKX2-6A6NCS4 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.76■□□□□ 0.91
NKX2-6A6NCS4 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NKX2-6A6NCS4 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.76■□□□□ 0.91
NKX2-6A6NCS4 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NKX2-6A6NCS4 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NKX2-6A6NCS4 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX2-6A6NCS4 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.75■□□□□ 0.91
NKX2-6A6NCS4 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX2-6A6NCS4 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.75■□□□□ 0.91
NKX2-6A6NCS4 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.75■□□□□ 0.91
NKX2-6A6NCS4 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX2-6A6NCS4 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX2-6A6NCS4 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX2-6A6NCS4 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NKX2-6A6NCS4 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.74■□□□□ 0.91
NKX2-6A6NCS4 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NKX2-6A6NCS4 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NKX2-6A6NCS4 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.73■□□□□ 0.91
NKX2-6A6NCS4 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.73■□□□□ 0.91
NKX2-6A6NCS4 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.73■□□□□ 0.91
NKX2-6A6NCS4 AC005837.3-201ENST00000612163 286 ntBASIC20.73■□□□□ 0.91
NKX2-6A6NCS4 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.73■□□□□ 0.91
NKX2-6A6NCS4 AF131216.4-201ENST00000638924 1588 ntBASIC20.72■□□□□ 0.91
NKX2-6A6NCS4 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-6A6NCS4 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-6A6NCS4 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-6A6NCS4 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-6A6NCS4 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-6A6NCS4 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-6A6NCS4 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20.71■□□□□ 0.91
NKX2-6A6NCS4 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC20.71■□□□□ 0.91
NKX2-6A6NCS4 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC20.71■□□□□ 0.91
NKX2-6A6NCS4 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.71■□□□□ 0.91
NKX2-6A6NCS4 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.71■□□□□ 0.91
NKX2-6A6NCS4 AL512631.2-201ENST00000604634 923 ntBASIC20.71■□□□□ 0.91
NKX2-6A6NCS4 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-6A6NCS4 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-6A6NCS4 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-6A6NCS4 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC20.71■□□□□ 0.91
NKX2-6A6NCS4 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
NKX2-6A6NCS4 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
NKX2-6A6NCS4 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-6A6NCS4 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-6A6NCS4 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.7■□□□□ 0.9
NKX2-6A6NCS4 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-6A6NCS4 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
NKX2-6A6NCS4 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NKX2-6A6NCS4 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.69■□□□□ 0.9
NKX2-6A6NCS4 FOXO3B-201ENST00000395675 1928 ntBASIC20.69■□□□□ 0.9
NKX2-6A6NCS4 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NKX2-6A6NCS4 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.69■□□□□ 0.9
NKX2-6A6NCS4 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NKX2-6A6NCS4 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NKX2-6A6NCS4 AC091060.1-201ENST00000623524 1766 ntBASIC20.69■□□□□ 0.9
NKX2-6A6NCS4 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NKX2-6A6NCS4 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NKX2-6A6NCS4 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.68■□□□□ 0.9
NKX2-6A6NCS4 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.68■□□□□ 0.9
NKX2-6A6NCS4 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NKX2-6A6NCS4 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NKX2-6A6NCS4 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NKX2-6A6NCS4 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NKX2-6A6NCS4 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.67■□□□□ 0.9
NKX2-6A6NCS4 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.67■□□□□ 0.9
NKX2-6A6NCS4 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NKX2-6A6NCS4 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NKX2-6A6NCS4 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.67■□□□□ 0.9
NKX2-6A6NCS4 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
NKX2-6A6NCS4 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NKX2-6A6NCS4 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.66■□□□□ 0.9
NKX2-6A6NCS4 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
NKX2-6A6NCS4 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NKX2-6A6NCS4 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
NKX2-6A6NCS4 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
NKX2-6A6NCS4 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
NKX2-6A6NCS4 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NKX2-6A6NCS4 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NKX2-6A6NCS4 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NKX2-6A6NCS4 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms