Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
LIMA1Q9UHB6 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
LIMA1Q9UHB6 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.22■□□□□ 0.35
LIMA1Q9UHB6 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 AC232323.1-201ENST00000540724 2099 ntBASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 REXO1L5P-201ENST00000622260 2098 ntBASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 MKNK2P1-201ENST00000437526 628 ntBASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 PGAM5P1-201ENST00000518923 814 ntBASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 LINC00552-201ENST00000625151 2579 ntBASIC17.21■□□□□ 0.35
LIMA1Q9UHB6 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
LIMA1Q9UHB6 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.21■□□□□ 0.34
LIMA1Q9UHB6 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 WASH3P-207ENST00000560956 1394 ntBASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 FO538757.1-201ENST00000623083 1397 ntBASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 FO393414.2-201ENST00000405153 598 ntBASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 AC105021.1-202ENST00000570572 669 ntBASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMA1Q9UHB6 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIMA1Q9UHB6 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
LIMA1Q9UHB6 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
LIMA1Q9UHB6 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms