Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL20A1Q9P218 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL20A1Q9P218 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL20A1Q9P218 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL20A1Q9P218 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
COL20A1Q9P218 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.65■□□□□ 0.42
COL20A1Q9P218 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC17.65■□□□□ 0.42
COL20A1Q9P218 AL355864.2-201ENST00000447420 863 ntBASIC17.65■□□□□ 0.42
COL20A1Q9P218 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC17.65■□□□□ 0.42
COL20A1Q9P218 KLF2P4-201ENST00000451959 1225 ntBASIC17.65■□□□□ 0.42
COL20A1Q9P218 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC17.65■□□□□ 0.42
COL20A1Q9P218 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.65■□□□□ 0.42
COL20A1Q9P218 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.65■□□□□ 0.42
COL20A1Q9P218 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.65■□□□□ 0.42
COL20A1Q9P218 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC17.65■□□□□ 0.42
COL20A1Q9P218 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC17.65■□□□□ 0.42
COL20A1Q9P218 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.65■□□□□ 0.42
COL20A1Q9P218 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.65■□□□□ 0.42
COL20A1Q9P218 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 AC084364.1-201ENST00000551967 1556 ntBASIC17.65■□□□□ 0.42
COL20A1Q9P218 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
COL20A1Q9P218 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
COL20A1Q9P218 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL20A1Q9P218 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC17.65■□□□□ 0.42
COL20A1Q9P218 AMT-224ENST00000635808 1610 ntTSL 5 BASIC17.65■□□□□ 0.42
COL20A1Q9P218 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
COL20A1Q9P218 AP005117.1-202ENST00000581724 1908 ntBASIC17.64■□□□□ 0.42
COL20A1Q9P218 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
COL20A1Q9P218 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.64■□□□□ 0.42
COL20A1Q9P218 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
COL20A1Q9P218 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
COL20A1Q9P218 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
COL20A1Q9P218 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL20A1Q9P218 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL20A1Q9P218 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL20A1Q9P218 AL365203.3-201ENST00000609742 2057 ntBASIC17.64■□□□□ 0.41
COL20A1Q9P218 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL20A1Q9P218 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL20A1Q9P218 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL20A1Q9P218 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL20A1Q9P218 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 HLA-V-201ENST00000429037 534 ntBASIC17.64■□□□□ 0.41
COL20A1Q9P218 RPL7P3-201ENST00000441388 714 ntBASIC17.64■□□□□ 0.41
COL20A1Q9P218 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL20A1Q9P218 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 AP000812.2-201ENST00000538934 718 ntBASIC17.64■□□□□ 0.41
COL20A1Q9P218 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL20A1Q9P218 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL20A1Q9P218 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL20A1Q9P218 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC17.64■□□□□ 0.41
COL20A1Q9P218 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL20A1Q9P218 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL20A1Q9P218 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL20A1Q9P218 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL20A1Q9P218 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.63■□□□□ 0.41
COL20A1Q9P218 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL20A1Q9P218 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms