Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 AL079307.3-201ENST00000556114 283 ntBASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 AL596442.2-201ENST00000610240 980 ntBASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
LRRC40Q9H9A6 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 LINC00628-201ENST00000628516 1289 ntBASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LRRC40Q9H9A6 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.02■□□□□ 0.15
LRRC40Q9H9A6 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.02■□□□□ 0.15
LRRC40Q9H9A6 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
LRRC40Q9H9A6 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LRRC40Q9H9A6 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.02■□□□□ 0.15
LRRC40Q9H9A6 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
LRRC40Q9H9A6 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LRRC40Q9H9A6 AC112693.3-201ENST00000624819 1983 ntBASIC16.02■□□□□ 0.15
LRRC40Q9H9A6 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
LRRC40Q9H9A6 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LRRC40Q9H9A6 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.02■□□□□ 0.15
LRRC40Q9H9A6 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
LRRC40Q9H9A6 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.02■□□□□ 0.15
LRRC40Q9H9A6 CETN4P-206ENST00000642099 2168 ntBASIC16.02■□□□□ 0.15
LRRC40Q9H9A6 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LRRC40Q9H9A6 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LRRC40Q9H9A6 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
LRRC40Q9H9A6 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
LRRC40Q9H9A6 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
LRRC40Q9H9A6 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LRRC40Q9H9A6 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LRRC40Q9H9A6 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.01■□□□□ 0.15
LRRC40Q9H9A6 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LRRC40Q9H9A6 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
LRRC40Q9H9A6 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LRRC40Q9H9A6 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LRRC40Q9H9A6 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms