Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 KRT18P13-201ENST00000400056 1290 ntBASIC13.84□□□□□ -0.19
NKX3-1Q99801 AC092474.2-201ENST00000424288 719 ntBASIC13.84□□□□□ -0.19
NKX3-1Q99801 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC13.84□□□□□ -0.19
NKX3-1Q99801 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC13.84□□□□□ -0.19
NKX3-1Q99801 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC13.84□□□□□ -0.19
NKX3-1Q99801 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 CD63-204ENST00000546939 779 ntTSL 3 BASIC13.84□□□□□ -0.19
NKX3-1Q99801 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.84□□□□□ -0.19
NKX3-1Q99801 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.84□□□□□ -0.19
NKX3-1Q99801 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC13.84□□□□□ -0.19
NKX3-1Q99801 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 AC011477.6-201ENST00000604980 1927 ntBASIC13.84□□□□□ -0.19
NKX3-1Q99801 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.84□□□□□ -0.19
NKX3-1Q99801 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC13.84□□□□□ -0.19
NKX3-1Q99801 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
NKX3-1Q99801 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
NKX3-1Q99801 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
NKX3-1Q99801 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
NKX3-1Q99801 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
NKX3-1Q99801 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC13.83□□□□□ -0.19
NKX3-1Q99801 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
NKX3-1Q99801 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC13.83□□□□□ -0.19
NKX3-1Q99801 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
NKX3-1Q99801 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
NKX3-1Q99801 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
NKX3-1Q99801 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 BEX3-201ENST00000361298 921 ntTSL 2 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 FABP5-202ENST00000396359 986 ntTSL 5 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 AC109635.5-201ENST00000533593 962 ntBASIC13.83□□□□□ -0.2
NKX3-1Q99801 AC096734.2-201ENST00000562054 433 ntBASIC13.83□□□□□ -0.2
NKX3-1Q99801 AL138918.1-201ENST00000568306 659 ntBASIC13.83□□□□□ -0.2
NKX3-1Q99801 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 AQP6-205ENST00000618286 829 ntTSL 5 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 AC004877.2-201ENST00000623941 599 ntBASIC13.83□□□□□ -0.2
NKX3-1Q99801 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 LINC00528-201ENST00000600723 2160 ntBASIC13.83□□□□□ -0.2
NKX3-1Q99801 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
NKX3-1Q99801 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC13.83□□□□□ -0.2
NKX3-1Q99801 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.82□□□□□ -0.2
NKX3-1Q99801 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 METTL26-205ENST00000397666 726 ntTSL 2 BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms