Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
COL12A1Q99715 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 GHSR-202ENST00000427970 912 ntBASIC13.48□□□□□ -0.25
COL12A1Q99715 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.48□□□□□ -0.25
COL12A1Q99715 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC13.48□□□□□ -0.25
COL12A1Q99715 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC13.48□□□□□ -0.25
COL12A1Q99715 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC13.48□□□□□ -0.25
COL12A1Q99715 AL023803.2-201ENST00000620080 638 ntBASIC13.48□□□□□ -0.25
COL12A1Q99715 AC073911.3-201ENST00000624401 631 ntBASIC13.48□□□□□ -0.25
COL12A1Q99715 AC005618.3-201ENST00000624928 458 ntBASIC13.48□□□□□ -0.25
COL12A1Q99715 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC13.48□□□□□ -0.25
COL12A1Q99715 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC13.47□□□□□ -0.25
COL12A1Q99715 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC13.47□□□□□ -0.25
COL12A1Q99715 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC13.47□□□□□ -0.25
COL12A1Q99715 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 ISCA2P1-201ENST00000425548 448 ntBASIC13.47□□□□□ -0.25
COL12A1Q99715 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC13.47□□□□□ -0.25
COL12A1Q99715 AL031713.1-201ENST00000564813 661 ntBASIC13.47□□□□□ -0.25
COL12A1Q99715 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
COL12A1Q99715 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC13.47□□□□□ -0.25
COL12A1Q99715 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC13.47□□□□□ -0.25
COL12A1Q99715 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.47□□□□□ -0.25
COL12A1Q99715 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
COL12A1Q99715 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC13.47□□□□□ -0.25
COL12A1Q99715 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC13.47□□□□□ -0.25
COL12A1Q99715 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 AL357563.1-201ENST00000404728 395 ntBASIC13.47□□□□□ -0.25
COL12A1Q99715 FAM8A4P-201ENST00000435433 1213 ntBASIC13.47□□□□□ -0.25
COL12A1Q99715 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC13.47□□□□□ -0.25
COL12A1Q99715 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 MIR4683-201ENST00000579659 81 ntBASIC13.47□□□□□ -0.25
COL12A1Q99715 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC13.47□□□□□ -0.25
COL12A1Q99715 AL627230.2-201ENST00000613254 655 ntBASIC13.47□□□□□ -0.25
COL12A1Q99715 AL132780.4-201ENST00000624870 1135 ntBASIC13.47□□□□□ -0.25
COL12A1Q99715 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL12A1Q99715 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC13.47□□□□□ -0.25
COL12A1Q99715 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC13.46□□□□□ -0.25
COL12A1Q99715 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
COL12A1Q99715 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
COL12A1Q99715 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
COL12A1Q99715 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC13.46□□□□□ -0.25
COL12A1Q99715 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.46□□□□□ -0.25
COL12A1Q99715 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
COL12A1Q99715 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL12A1Q99715 HNRNPA1P42-201ENST00000458678 957 ntBASIC13.46□□□□□ -0.25
COL12A1Q99715 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC13.46□□□□□ -0.25
COL12A1Q99715 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
COL12A1Q99715 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
COL12A1Q99715 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL12A1Q99715 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
COL12A1Q99715 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.46□□□□□ -0.26
COL12A1Q99715 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC13.46□□□□□ -0.26
COL12A1Q99715 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.26
COL12A1Q99715 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.26
COL12A1Q99715 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC13.46□□□□□ -0.26
COL12A1Q99715 POM121L8P-201ENST00000417732 1281 ntBASIC13.45□□□□□ -0.26
COL12A1Q99715 POM121L9P-203ENST00000441984 1285 ntBASIC13.45□□□□□ -0.26
COL12A1Q99715 RN7SL396P-201ENST00000471086 295 ntBASIC13.45□□□□□ -0.26
COL12A1Q99715 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
COL12A1Q99715 AL391280.1-201ENST00000506969 1062 ntBASIC13.45□□□□□ -0.26
COL12A1Q99715 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL12A1Q99715 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL12A1Q99715 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL12A1Q99715 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC13.45□□□□□ -0.26
COL12A1Q99715 AP001094.4-201ENST00000579008 2176 ntBASIC13.45□□□□□ -0.26
COL12A1Q99715 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
COL12A1Q99715 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL12A1Q99715 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms