Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 PGR-210ENST00000619228 3038 ntTSL 5 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CCDC140Q96MF4 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 AC055876.3-201ENST00000431496 288 ntBASIC12.19□□□□□ -0.46
CCDC140Q96MF4 KRT18P64-201ENST00000434946 1219 ntBASIC12.19□□□□□ -0.46
CCDC140Q96MF4 RPL13P2-201ENST00000440687 659 ntBASIC12.19□□□□□ -0.46
CCDC140Q96MF4 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 ZNF890P-202ENST00000530367 1156 ntBASIC12.19□□□□□ -0.46
CCDC140Q96MF4 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 AC044860.1-202ENST00000559481 777 ntBASIC12.19□□□□□ -0.46
CCDC140Q96MF4 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 AL390955.2-201ENST00000603032 514 ntBASIC12.19□□□□□ -0.46
CCDC140Q96MF4 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 AC138649.4-201ENST00000612222 287 ntBASIC12.19□□□□□ -0.46
CCDC140Q96MF4 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 HADH-212ENST00000638621 741 ntTSL 5 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 STK33-217ENST00000534493 1895 ntTSL 2 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC12.19□□□□□ -0.46
CCDC140Q96MF4 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
CCDC140Q96MF4 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms