Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 COA5-202ENST00000409997 557 ntTSL 4 BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 MCCD1P2-201ENST00000423228 335 ntBASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 GPX1P2-201ENST00000429271 606 ntBASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 KRT18P2-201ENST00000447938 1258 ntBASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 CXCL1P1-201ENST00000502804 216 ntBASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 BCAR1-209ENST00000546196 1340 ntBASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 COX5A-206ENST00000568783 571 ntTSL 3 BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 AC005829.1-201ENST00000570002 483 ntBASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 CICP24-201ENST00000605464 2705 ntBASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 NEK7-201ENST00000367383 586 ntTSL 2 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 RPSAP43-201ENST00000402237 625 ntBASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 AC112482.1-201ENST00000492080 688 ntBASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 DHDH-204ENST00000523250 634 ntTSL 5 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 CIPC-205ENST00000555437 566 ntTSL 3 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 AC018845.2-201ENST00000568326 409 ntBASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 AL691403.2-201ENST00000618460 490 ntBASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.78□□□□□ -0.04
DEPDC4Q8N2C3 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
DEPDC4Q8N2C3 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
DEPDC4Q8N2C3 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.77□□□□□ -0.04
DEPDC4Q8N2C3 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
DEPDC4Q8N2C3 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
DEPDC4Q8N2C3 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.77□□□□□ -0.04
DEPDC4Q8N2C3 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
DEPDC4Q8N2C3 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
DEPDC4Q8N2C3 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
DEPDC4Q8N2C3 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
DEPDC4Q8N2C3 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms