Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS52Q8N1B4 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.15■□□□□ 0.34
VPS52Q8N1B4 GGT3P-204ENST00000453783 1664 ntBASIC17.15■□□□□ 0.34
VPS52Q8N1B4 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VPS52Q8N1B4 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS52Q8N1B4 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS52Q8N1B4 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS52Q8N1B4 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
VPS52Q8N1B4 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS52Q8N1B4 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS52Q8N1B4 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS52Q8N1B4 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS52Q8N1B4 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VPS52Q8N1B4 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS52Q8N1B4 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS52Q8N1B4 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS52Q8N1B4 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
VPS52Q8N1B4 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 AC007389.4-201ENST00000454674 793 ntBASIC17.14■□□□□ 0.33
VPS52Q8N1B4 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 AC104596.2-201ENST00000512793 793 ntBASIC17.14■□□□□ 0.33
VPS52Q8N1B4 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 RARRES2P5-201ENST00000564013 466 ntBASIC17.14■□□□□ 0.33
VPS52Q8N1B4 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 AL512343.1-201ENST00000605837 169 ntBASIC17.14■□□□□ 0.33
VPS52Q8N1B4 MIR8072-201ENST00000614241 80 ntBASIC17.14■□□□□ 0.33
VPS52Q8N1B4 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS52Q8N1B4 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 CLK3P2-201ENST00000427566 1453 ntBASIC17.13■□□□□ 0.33
VPS52Q8N1B4 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 AL033527.5-201ENST00000641382 801 ntBASIC17.13■□□□□ 0.33
VPS52Q8N1B4 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS52Q8N1B4 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms