Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RNF4P78317 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RNF4P78317 AC087499.6-201ENST00000411576 835 ntBASIC14.6□□□□□ -0.07
RNF4P78317 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.6□□□□□ -0.07
RNF4P78317 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.6□□□□□ -0.07
RNF4P78317 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.6□□□□□ -0.07
RNF4P78317 AC055876.2-201ENST00000531834 546 ntBASIC14.6□□□□□ -0.07
RNF4P78317 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.6□□□□□ -0.07
RNF4P78317 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.6□□□□□ -0.07
RNF4P78317 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.6□□□□□ -0.07
RNF4P78317 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RNF4P78317 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RNF4P78317 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.6□□□□□ -0.07
RNF4P78317 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.6□□□□□ -0.07
RNF4P78317 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.6□□□□□ -0.07
RNF4P78317 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
RNF4P78317 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.6□□□□□ -0.07
RNF4P78317 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
RNF4P78317 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
RNF4P78317 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
RNF4P78317 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RNF4P78317 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
RNF4P78317 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
RNF4P78317 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
RNF4P78317 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RNF4P78317 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.6□□□□□ -0.07
RNF4P78317 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RNF4P78317 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RNF4P78317 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 AC063926.3-201ENST00000624734 5658 ntBASIC14.59□□□□□ -0.07
RNF4P78317 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
RNF4P78317 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.59□□□□□ -0.07
RNF4P78317 PRAL-201ENST00000624952 3286 ntBASIC14.59□□□□□ -0.07
RNF4P78317 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 AL035633.1-201ENST00000406139 838 ntBASIC14.59□□□□□ -0.07
RNF4P78317 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.59□□□□□ -0.07
RNF4P78317 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.59□□□□□ -0.07
RNF4P78317 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.59□□□□□ -0.07
RNF4P78317 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.59□□□□□ -0.07
RNF4P78317 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 COX20P2-201ENST00000452636 358 ntBASIC14.59□□□□□ -0.07
RNF4P78317 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.59□□□□□ -0.07
RNF4P78317 API5-211ENST00000534695 560 ntTSL 5 BASIC14.59□□□□□ -0.07
RNF4P78317 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.59□□□□□ -0.07
RNF4P78317 RARRES2P5-201ENST00000564013 466 ntBASIC14.59□□□□□ -0.07
RNF4P78317 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
RNF4P78317 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.59□□□□□ -0.07
RNF4P78317 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
RNF4P78317 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.59□□□□□ -0.07
RNF4P78317 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
RNF4P78317 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.59□□□□□ -0.07
RNF4P78317 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNF4P78317 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.58□□□□□ -0.07
RNF4P78317 AP005117.1-202ENST00000581724 1908 ntBASIC14.58□□□□□ -0.07
RNF4P78317 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.58□□□□□ -0.07
RNF4P78317 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
RNF4P78317 AC126755.1-201ENST00000525846 6405 ntBASIC14.58□□□□□ -0.07
RNF4P78317 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
RNF4P78317 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
RNF4P78317 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
RNF4P78317 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.58□□□□□ -0.07
RNF4P78317 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.07
RNF4P78317 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.07
RNF4P78317 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
RNF4P78317 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
RNF4P78317 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.58□□□□□ -0.07
RNF4P78317 AC138969.3-201ENST00000546612 1459 ntBASIC14.58□□□□□ -0.08
RNF4P78317 AC138932.2-201ENST00000548268 1459 ntBASIC14.58□□□□□ -0.08
RNF4P78317 AC126755.4-201ENST00000549796 1459 ntBASIC14.58□□□□□ -0.08
RNF4P78317 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.58□□□□□ -0.08
RNF4P78317 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
RNF4P78317 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.58□□□□□ -0.08
RNF4P78317 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
RNF4P78317 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.58□□□□□ -0.08
RNF4P78317 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.58□□□□□ -0.08
RNF4P78317 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNF4P78317 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.58□□□□□ -0.08
RNF4P78317 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms