Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PKNOX1P55347 AC090616.6-203ENST00000579186 1945 ntBASIC15.53■□□□□ 0.08
PKNOX1P55347 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.53■□□□□ 0.08
PKNOX1P55347 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.53■□□□□ 0.08
PKNOX1P55347 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 FAM220BP-201ENST00000377689 816 ntBASIC15.53■□□□□ 0.08
PKNOX1P55347 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.53■□□□□ 0.08
PKNOX1P55347 AC142381.1-201ENST00000426099 345 ntBASIC15.53■□□□□ 0.08
PKNOX1P55347 RPS8P6-201ENST00000426177 609 ntBASIC15.53■□□□□ 0.08
PKNOX1P55347 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.53■□□□□ 0.08
PKNOX1P55347 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.53■□□□□ 0.08
PKNOX1P55347 KLK8-205ENST00000593490 267 ntTSL 3 BASIC15.53■□□□□ 0.08
PKNOX1P55347 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
PKNOX1P55347 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC15.53■□□□□ 0.08
PKNOX1P55347 AC091812.2-201ENST00000619081 385 ntBASIC15.53■□□□□ 0.08
PKNOX1P55347 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.53■□□□□ 0.08
PKNOX1P55347 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.53■□□□□ 0.08
PKNOX1P55347 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.53■□□□□ 0.08
PKNOX1P55347 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.53■□□□□ 0.08
PKNOX1P55347 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PKNOX1P55347 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.53■□□□□ 0.08
PKNOX1P55347 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.53■□□□□ 0.08
PKNOX1P55347 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
PKNOX1P55347 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.53■□□□□ 0.08
PKNOX1P55347 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PKNOX1P55347 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.53■□□□□ 0.08
PKNOX1P55347 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.53■□□□□ 0.08
PKNOX1P55347 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.53■□□□□ 0.08
PKNOX1P55347 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.53■□□□□ 0.08
PKNOX1P55347 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
PKNOX1P55347 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PKNOX1P55347 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PKNOX1P55347 CICP23-201ENST00000605013 2741 ntBASIC15.52■□□□□ 0.08
PKNOX1P55347 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
PKNOX1P55347 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PKNOX1P55347 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.52■□□□□ 0.08
PKNOX1P55347 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PKNOX1P55347 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PKNOX1P55347 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.52■□□□□ 0.08
PKNOX1P55347 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PKNOX1P55347 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PKNOX1P55347 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.52■□□□□ 0.08
PKNOX1P55347 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PKNOX1P55347 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PKNOX1P55347 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PKNOX1P55347 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PKNOX1P55347 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
PKNOX1P55347 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PKNOX1P55347 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
PKNOX1P55347 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PKNOX1P55347 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PKNOX1P55347 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
PKNOX1P55347 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.52■□□□□ 0.08
PKNOX1P55347 FDX1P1-201ENST00000449115 551 ntBASIC15.52■□□□□ 0.08
PKNOX1P55347 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.52■□□□□ 0.08
PKNOX1P55347 RNA5SP410-201ENST00000516285 106 ntBASIC15.52■□□□□ 0.08
PKNOX1P55347 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.52■□□□□ 0.08
PKNOX1P55347 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.52■□□□□ 0.08
PKNOX1P55347 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.52■□□□□ 0.08
PKNOX1P55347 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.52■□□□□ 0.08
PKNOX1P55347 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PKNOX1P55347 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.08
PKNOX1P55347 REXO1L1P-202ENST00000608646 1974 ntBASIC15.52■□□□□ 0.07
PKNOX1P55347 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PKNOX1P55347 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
PKNOX1P55347 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.52■□□□□ 0.07
PKNOX1P55347 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PKNOX1P55347 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PKNOX1P55347 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PKNOX1P55347 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
PKNOX1P55347 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PKNOX1P55347 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
PKNOX1P55347 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.52■□□□□ 0.07
PKNOX1P55347 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.52■□□□□ 0.07
PKNOX1P55347 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
PKNOX1P55347 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
PKNOX1P55347 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms