Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
NUP98P52948 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
NUP98P52948 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
NUP98P52948 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NUP98P52948 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.21■□□□□ 0.67
NUP98P52948 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
NUP98P52948 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NUP98P52948 AC020763.4-201ENST00000623414 4170 ntBASIC19.21■□□□□ 0.67
NUP98P52948 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NUP98P52948 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
NUP98P52948 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
NUP98P52948 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC19.21■□□□□ 0.67
NUP98P52948 COX5BP1-201ENST00000507622 393 ntBASIC19.21■□□□□ 0.67
NUP98P52948 AC105129.2-201ENST00000559536 390 ntBASIC19.21■□□□□ 0.67
NUP98P52948 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC19.21■□□□□ 0.67
NUP98P52948 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC19.21■□□□□ 0.67
NUP98P52948 NDUFV2P1-201ENST00000596415 907 ntBASIC19.21■□□□□ 0.67
NUP98P52948 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC19.21■□□□□ 0.67
NUP98P52948 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.66
NUP98P52948 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUP98P52948 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NUP98P52948 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUP98P52948 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NUP98P52948 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
NUP98P52948 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.2■□□□□ 0.66
NUP98P52948 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
NUP98P52948 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NUP98P52948 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUP98P52948 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUP98P52948 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC19.2■□□□□ 0.66
NUP98P52948 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUP98P52948 TPM3P8-201ENST00000330554 643 ntBASIC19.2■□□□□ 0.66
NUP98P52948 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
NUP98P52948 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUP98P52948 NDUFAB1P1-201ENST00000404262 460 ntBASIC19.2■□□□□ 0.66
NUP98P52948 NKAIN1P1-201ENST00000435754 582 ntBASIC19.2■□□□□ 0.66
NUP98P52948 AKR7A2P1-201ENST00000460134 915 ntBASIC19.2■□□□□ 0.66
NUP98P52948 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NUP98P52948 OR10B1P-201ENST00000601666 907 ntBASIC19.2■□□□□ 0.66
NUP98P52948 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.2■□□□□ 0.66
NUP98P52948 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC19.2■□□□□ 0.66
NUP98P52948 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUP98P52948 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NUP98P52948 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC19.19■□□□□ 0.66
NUP98P52948 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NUP98P52948 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NUP98P52948 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.19■□□□□ 0.66
NUP98P52948 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUP98P52948 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NUP98P52948 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUP98P52948 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUP98P52948 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUP98P52948 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NUP98P52948 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC19.19■□□□□ 0.66
NUP98P52948 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
NUP98P52948 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC19.19■□□□□ 0.66
NUP98P52948 ARTN-209ENST00000479128 471 ntTSL 3 BASIC19.19■□□□□ 0.66
NUP98P52948 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC19.19■□□□□ 0.66
NUP98P52948 AP001258.2-201ENST00000529891 490 ntBASIC19.19■□□□□ 0.66
NUP98P52948 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC19.19■□□□□ 0.66
NUP98P52948 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
NUP98P52948 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC19.19■□□□□ 0.66
NUP98P52948 NAT9-222ENST00000583476 583 ntTSL 3 BASIC19.19■□□□□ 0.66
NUP98P52948 AP001002.3-201ENST00000623482 206 ntBASIC19.19■□□□□ 0.66
NUP98P52948 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC19.19■□□□□ 0.66
NUP98P52948 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
NUP98P52948 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NUP98P52948 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC19.19■□□□□ 0.66
NUP98P52948 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUP98P52948 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
NUP98P52948 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC19.19■□□□□ 0.66
NUP98P52948 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
NUP98P52948 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.19■□□□□ 0.66
NUP98P52948 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUP98P52948 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NUP98P52948 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NUP98P52948 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC19.19■□□□□ 0.66
NUP98P52948 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC19.19■□□□□ 0.66
NUP98P52948 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
NUP98P52948 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
NUP98P52948 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC19.18■□□□□ 0.66
NUP98P52948 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC19.18■□□□□ 0.66
NUP98P52948 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC19.18■□□□□ 0.66
NUP98P52948 ADM-202ENST00000524948 584 ntTSL 2 BASIC19.18■□□□□ 0.66
NUP98P52948 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC19.18■□□□□ 0.66
NUP98P52948 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC19.18■□□□□ 0.66
NUP98P52948 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC19.18■□□□□ 0.66
NUP98P52948 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC19.18■□□□□ 0.66
NUP98P52948 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC19.18■□□□□ 0.66
NUP98P52948 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC19.18■□□□□ 0.66
NUP98P52948 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUP98P52948 LINC02199-201ENST00000506655 2702 ntBASIC19.18■□□□□ 0.66
NUP98P52948 TNRC18P3-201ENST00000441896 2691 ntBASIC19.18■□□□□ 0.66
NUP98P52948 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUP98P52948 AC105250.1-201ENST00000509378 2057 ntBASIC19.18■□□□□ 0.66
NUP98P52948 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUP98P52948 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NUP98P52948 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC19.18■□□□□ 0.66
NUP98P52948 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NUP98P52948 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms