Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
BRCC3P46736 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
BRCC3P46736 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
BRCC3P46736 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BRCC3P46736 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
BRCC3P46736 TNRC18P3-201ENST00000441896 2691 ntBASIC16.69■□□□□ 0.26
BRCC3P46736 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.69■□□□□ 0.26
BRCC3P46736 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BRCC3P46736 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCC3P46736 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
BRCC3P46736 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCC3P46736 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCC3P46736 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
BRCC3P46736 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.68■□□□□ 0.26
BRCC3P46736 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BRCC3P46736 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCC3P46736 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BRCC3P46736 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCC3P46736 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
BRCC3P46736 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCC3P46736 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.68■□□□□ 0.26
BRCC3P46736 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCC3P46736 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCC3P46736 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCC3P46736 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
BRCC3P46736 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.68■□□□□ 0.26
BRCC3P46736 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCC3P46736 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCC3P46736 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
BRCC3P46736 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCC3P46736 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BRCC3P46736 AC093433.1-201ENST00000458048 571 ntBASIC16.68■□□□□ 0.26
BRCC3P46736 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.68■□□□□ 0.26
BRCC3P46736 AP001889.1-201ENST00000525414 633 ntBASIC16.68■□□□□ 0.26
BRCC3P46736 PTP4A1P2-201ENST00000546033 454 ntBASIC16.68■□□□□ 0.26
BRCC3P46736 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.68■□□□□ 0.26
BRCC3P46736 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.68■□□□□ 0.26
BRCC3P46736 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.68■□□□□ 0.26
BRCC3P46736 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.68■□□□□ 0.26
BRCC3P46736 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCC3P46736 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCC3P46736 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
BRCC3P46736 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BRCC3P46736 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCC3P46736 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
BRCC3P46736 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCC3P46736 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCC3P46736 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCC3P46736 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCC3P46736 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCC3P46736 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
BRCC3P46736 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
BRCC3P46736 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BRCC3P46736 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
BRCC3P46736 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCC3P46736 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
BRCC3P46736 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
BRCC3P46736 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
BRCC3P46736 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BRCC3P46736 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCC3P46736 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCC3P46736 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCC3P46736 PDIA3P1-201ENST00000471856 1510 ntBASIC16.67■□□□□ 0.26
BRCC3P46736 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.67■□□□□ 0.26
BRCC3P46736 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCC3P46736 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCC3P46736 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BRCC3P46736 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.67■□□□□ 0.26
BRCC3P46736 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BRCC3P46736 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
BRCC3P46736 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BRCC3P46736 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BRCC3P46736 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.67■□□□□ 0.26
BRCC3P46736 KRT43P-201ENST00000434019 910 ntBASIC16.67■□□□□ 0.26
BRCC3P46736 RPS2P32-201ENST00000439199 892 ntBASIC16.67■□□□□ 0.26
BRCC3P46736 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.67■□□□□ 0.26
BRCC3P46736 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.67■□□□□ 0.26
BRCC3P46736 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.67■□□□□ 0.26
BRCC3P46736 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.67■□□□□ 0.26
BRCC3P46736 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.67■□□□□ 0.26
BRCC3P46736 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.67■□□□□ 0.26
BRCC3P46736 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
BRCC3P46736 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCC3P46736 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
BRCC3P46736 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BRCC3P46736 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCC3P46736 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
BRCC3P46736 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
BRCC3P46736 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
BRCC3P46736 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
BRCC3P46736 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BRCC3P46736 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
BRCC3P46736 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
BRCC3P46736 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BRCC3P46736 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.66■□□□□ 0.26
BRCC3P46736 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BRCC3P46736 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BRCC3P46736 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BRCC3P46736 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
BRCC3P46736 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms