Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.12■□□□□ 0.01
MSX2P35548 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.12■□□□□ 0.01
MSX2P35548 AL589702.1-201ENST00000641229 1509 ntBASIC15.12■□□□□ 0.01
MSX2P35548 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
MSX2P35548 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.12■□□□□ 0.01
MSX2P35548 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
MSX2P35548 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
MSX2P35548 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
MSX2P35548 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
MSX2P35548 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.12■□□□□ 0.01
MSX2P35548 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.12■□□□□ 0.01
MSX2P35548 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.12■□□□□ 0.01
MSX2P35548 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
MSX2P35548 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.12■□□□□ 0.01
MSX2P35548 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
MSX2P35548 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.12■□□□□ 0.01
MSX2P35548 SCARNA2-201ENST00000458748 420 ntBASIC15.12■□□□□ 0.01
MSX2P35548 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.12■□□□□ 0.01
MSX2P35548 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.12■□□□□ 0.01
MSX2P35548 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.12■□□□□ 0.01
MSX2P35548 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.12■□□□□ 0.01
MSX2P35548 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.12■□□□□ 0.01
MSX2P35548 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.12■□□□□ 0.01
MSX2P35548 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.12■□□□□ 0.01
MSX2P35548 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.12■□□□□ 0.01
MSX2P35548 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC15.12■□□□□ 0.01
MSX2P35548 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC15.12■□□□□ 0.01
MSX2P35548 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSX2P35548 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.11■□□□□ 0.01
MSX2P35548 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
MSX2P35548 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
MSX2P35548 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.11■□□□□ 0.01
MSX2P35548 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
MSX2P35548 RPS2P1-201ENST00000434010 821 ntBASIC15.11■□□□□ 0.01
MSX2P35548 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.11■□□□□ 0.01
MSX2P35548 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC15.11■□□□□ 0.01
MSX2P35548 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.11■□□□□ 0.01
MSX2P35548 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.11■□□□□ 0.01
MSX2P35548 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
MSX2P35548 AC004790.2-201ENST00000623588 572 ntBASIC15.11■□□□□ 0.01
MSX2P35548 AL358472.4-201ENST00000633140 710 ntBASIC15.11■□□□□ 0.01
MSX2P35548 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
MSX2P35548 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
MSX2P35548 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.11■□□□□ 0.01
MSX2P35548 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
MSX2P35548 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSX2P35548 MROH4P-201ENST00000431302 1578 ntBASIC15.11■□□□□ 0.01
MSX2P35548 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC15.11■□□□□ 0.01
MSX2P35548 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.1■□□□□ 0.01
MSX2P35548 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.1■□□□□ 0.01
MSX2P35548 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
MSX2P35548 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
MSX2P35548 AC010327.5-201ENST00000586923 3061 ntBASIC15.1■□□□□ 0.01
MSX2P35548 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms