Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC16.29■□□□□ 0.2
HOXA9P31269 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA9P31269 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXA9P31269 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA9P31269 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA9P31269 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA9P31269 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA9P31269 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HOXA9P31269 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA9P31269 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXA9P31269 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA9P31269 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA9P31269 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA9P31269 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA9P31269 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
HOXA9P31269 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXA9P31269 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXA9P31269 CICP6-201ENST00000457191 2729 ntBASIC16.28■□□□□ 0.2
HOXA9P31269 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA9P31269 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
HOXA9P31269 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA9P31269 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA9P31269 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA9P31269 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA9P31269 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA9P31269 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA9P31269 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA9P31269 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HOXA9P31269 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA9P31269 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
HOXA9P31269 ACTBP8-201ENST00000403258 1108 ntBASIC16.28■□□□□ 0.2
HOXA9P31269 MIR1247-201ENST00000408206 136 ntBASIC16.28■□□□□ 0.2
HOXA9P31269 GPAA1P2-201ENST00000417923 928 ntBASIC16.28■□□□□ 0.2
HOXA9P31269 NUS1P3-201ENST00000423502 862 ntBASIC16.28■□□□□ 0.2
HOXA9P31269 FAM197Y7-201ENST00000432892 766 ntBASIC16.28■□□□□ 0.2
HOXA9P31269 AC006033.1-201ENST00000440505 426 ntBASIC16.28■□□□□ 0.2
HOXA9P31269 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC16.28■□□□□ 0.2
HOXA9P31269 AC099548.2-209ENST00000480264 625 ntBASIC16.28■□□□□ 0.2
HOXA9P31269 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.28■□□□□ 0.2
HOXA9P31269 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXA9P31269 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXA9P31269 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC16.28■□□□□ 0.2
HOXA9P31269 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC16.28■□□□□ 0.2
HOXA9P31269 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC16.28■□□□□ 0.2
HOXA9P31269 AC138951.2-201ENST00000623455 1161 ntBASIC16.28■□□□□ 0.2
HOXA9P31269 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC16.28■□□□□ 0.2
HOXA9P31269 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA9P31269 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXA9P31269 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA9P31269 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
HOXA9P31269 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA9P31269 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXA9P31269 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.28■□□□□ 0.2
HOXA9P31269 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA9P31269 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.28■□□□□ 0.2
HOXA9P31269 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
HOXA9P31269 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
HOXA9P31269 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA9P31269 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA9P31269 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA9P31269 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.28■□□□□ 0.2
HOXA9P31269 DOC2GP-204ENST00000639052 2548 ntBASIC16.27■□□□□ 0.2
HOXA9P31269 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
HOXA9P31269 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXA9P31269 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXA9P31269 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.27■□□□□ 0.2
HOXA9P31269 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.27■□□□□ 0.2
HOXA9P31269 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.27■□□□□ 0.2
HOXA9P31269 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
HOXA9P31269 AHCYP2-201ENST00000430630 1300 ntBASIC16.27■□□□□ 0.2
HOXA9P31269 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXA9P31269 MTHFR-217ENST00000641820 1569 ntBASIC16.27■□□□□ 0.2
HOXA9P31269 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXA9P31269 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXA9P31269 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXA9P31269 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
HOXA9P31269 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HOXA9P31269 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXA9P31269 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.27■□□□□ 0.2
HOXA9P31269 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
HOXA9P31269 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.27■□□□□ 0.2
HOXA9P31269 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HOXA9P31269 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC16.27■□□□□ 0.2
HOXA9P31269 RNA5SP486-201ENST00000515961 83 ntBASIC16.27■□□□□ 0.2
HOXA9P31269 AC078819.1-201ENST00000547454 765 ntBASIC16.27■□□□□ 0.2
HOXA9P31269 AC012085.1-201ENST00000548270 765 ntBASIC16.27■□□□□ 0.2
HOXA9P31269 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.27■□□□□ 0.2
HOXA9P31269 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXA9P31269 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC16.27■□□□□ 0.2
HOXA9P31269 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXA9P31269 AC091271.1-201ENST00000611877 1162 ntBASIC16.27■□□□□ 0.2
HOXA9P31269 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.27■□□□□ 0.2
HOXA9P31269 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HOXA9P31269 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
HOXA9P31269 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.27■□□□□ 0.19
HOXA9P31269 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HOXA9P31269 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HOXA9P31269 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
HOXA9P31269 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HOXA9P31269 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms