Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.03■□□□□ -0
SDC1P18827 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.02■□□□□ -0
SDC1P18827 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
SDC1P18827 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.02■□□□□ -0
SDC1P18827 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.02■□□□□ -0
SDC1P18827 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.02■□□□□ -0
SDC1P18827 AGAP7P-201ENST00000582299 2062 ntBASIC15.02■□□□□ -0
SDC1P18827 AGAP14-201ENST00000624701 2060 ntBASIC15.02■□□□□ -0
SDC1P18827 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.02■□□□□ -0
SDC1P18827 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.02■□□□□ -0
SDC1P18827 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
SDC1P18827 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
SDC1P18827 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.02■□□□□ -0
SDC1P18827 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.02■□□□□ -0
SDC1P18827 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.02■□□□□ -0
SDC1P18827 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.02■□□□□ -0
SDC1P18827 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.02■□□□□ -0
SDC1P18827 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.02■□□□□ -0
SDC1P18827 AP000344.2-201ENST00000512987 629 ntBASIC15.02■□□□□ -0
SDC1P18827 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.02■□□□□ -0
SDC1P18827 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.02■□□□□ -0
SDC1P18827 AC026150.2-201ENST00000564693 1156 ntBASIC15.02■□□□□ -0
SDC1P18827 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.02■□□□□ -0
SDC1P18827 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.02■□□□□ -0
SDC1P18827 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.02■□□□□ -0
SDC1P18827 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.02□□□□□ -0.01
SDC1P18827 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDC1P18827 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDC1P18827 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDC1P18827 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
SDC1P18827 CICP24-201ENST00000605464 2705 ntBASIC15.02□□□□□ -0.01
SDC1P18827 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
SDC1P18827 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
SDC1P18827 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SDC1P18827 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.02□□□□□ -0.01
SDC1P18827 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDC1P18827 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDC1P18827 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
SDC1P18827 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.02□□□□□ -0.01
SDC1P18827 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
SDC1P18827 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.02□□□□□ -0.01
SDC1P18827 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SDC1P18827 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SDC1P18827 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.02□□□□□ -0.01
SDC1P18827 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.02□□□□□ -0.01
SDC1P18827 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SDC1P18827 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
SDC1P18827 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.01□□□□□ -0.01
SDC1P18827 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
SDC1P18827 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
SDC1P18827 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.01□□□□□ -0.01
SDC1P18827 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.01□□□□□ -0.01
SDC1P18827 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.01□□□□□ -0.01
SDC1P18827 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.01□□□□□ -0.01
SDC1P18827 CBFB-203ENST00000561924 584 ntTSL 5 BASIC15.01□□□□□ -0.01
SDC1P18827 AC010327.4-202ENST00000591484 748 ntBASIC15.01□□□□□ -0.01
SDC1P18827 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDC1P18827 AC007967.4-201ENST00000614700 386 ntBASIC15.01□□□□□ -0.01
SDC1P18827 AC009093.7-201ENST00000623853 1223 ntBASIC15.01□□□□□ -0.01
SDC1P18827 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.01□□□□□ -0.01
SDC1P18827 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.01□□□□□ -0.01
SDC1P18827 AC099063.4-201ENST00000641099 1602 ntBASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms