Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 USP32P1-208ENST00000506594 1164 ntBASIC15.34■□□□□ 0.05
TNFP01375 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 ORC6-206ENST00000568364 888 ntTSL 5 BASIC15.34■□□□□ 0.05
TNFP01375 AC009486.1-201ENST00000569860 813 ntBASIC15.34■□□□□ 0.05
TNFP01375 MIR5189-201ENST00000577370 114 ntBASIC15.34■□□□□ 0.05
TNFP01375 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.34■□□□□ 0.05
TNFP01375 AC093813.1-201ENST00000605066 256 ntBASIC15.34■□□□□ 0.05
TNFP01375 AL022328.1-201ENST00000610050 478 ntBASIC15.34■□□□□ 0.05
TNFP01375 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.34■□□□□ 0.05
TNFP01375 RPSAP52-203ENST00000622976 1023 ntBASIC15.34■□□□□ 0.05
TNFP01375 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.34■□□□□ 0.05
TNFP01375 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.34■□□□□ 0.05
TNFP01375 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
TNFP01375 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.34■□□□□ 0.05
TNFP01375 AC018665.1-201ENST00000622927 1362 ntBASIC15.34■□□□□ 0.05
TNFP01375 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 PCDH8P1-201ENST00000428983 2773 ntBASIC15.34■□□□□ 0.05
TNFP01375 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 AC018695.7-201ENST00000624587 2492 ntBASIC15.34■□□□□ 0.05
TNFP01375 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.34■□□□□ 0.05
TNFP01375 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 CYP2T1P-202ENST00000641596 2535 ntBASIC15.34■□□□□ 0.05
TNFP01375 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
TNFP01375 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.05
TNFP01375 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.33■□□□□ 0.05
TNFP01375 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
TNFP01375 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TNFP01375 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TNFP01375 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TNFP01375 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TNFP01375 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.04
TNFP01375 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TNFP01375 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TNFP01375 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TNFP01375 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.33■□□□□ 0.04
TNFP01375 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.33■□□□□ 0.04
TNFP01375 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TNFP01375 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.33■□□□□ 0.04
TNFP01375 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
TNFP01375 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC15.33■□□□□ 0.04
TNFP01375 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.33■□□□□ 0.04
TNFP01375 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.33■□□□□ 0.04
TNFP01375 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC15.33■□□□□ 0.04
TNFP01375 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
TNFP01375 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TNFP01375 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.33■□□□□ 0.04
TNFP01375 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.33■□□□□ 0.04
TNFP01375 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TNFP01375 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
TNFP01375 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
TNFP01375 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TNFP01375 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
TNFP01375 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TNFP01375 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.33■□□□□ 0.04
TNFP01375 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TNFP01375 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TNFP01375 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TNFP01375 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TNFP01375 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.32■□□□□ 0.04
TNFP01375 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.32■□□□□ 0.04
TNFP01375 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
TNFP01375 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.32■□□□□ 0.04
TNFP01375 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.32■□□□□ 0.04
TNFP01375 CROCCP4-201ENST00000457096 498 ntBASIC15.32■□□□□ 0.04
TNFP01375 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
TNFP01375 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TNFP01375 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 AC026410.3-201ENST00000514280 936 ntBASIC15.32■□□□□ 0.04
TNFP01375 AC068587.3-201ENST00000526613 355 ntBASIC15.32■□□□□ 0.04
TNFP01375 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 AP005482.1-201ENST00000563722 1273 ntBASIC15.32■□□□□ 0.04
TNFP01375 AP001063.1-201ENST00000568332 529 ntBASIC15.32■□□□□ 0.04
TNFP01375 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.32■□□□□ 0.04
TNFP01375 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.32■□□□□ 0.04
TNFP01375 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms