Protein–RNA interactions for Protein: O43924

PDE6D, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta, humanhuman

Predictions only

Length 150 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDE6DO43924 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PDE6DO43924 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PDE6DO43924 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PDE6DO43924 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC12.29□□□□□ -0.44
PDE6DO43924 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
PDE6DO43924 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PDE6DO43924 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 FLII-221ENST00000578558 2377 ntTSL 5 BASIC12.28□□□□□ -0.44
PDE6DO43924 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
PDE6DO43924 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC12.28□□□□□ -0.44
PDE6DO43924 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
PDE6DO43924 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
PDE6DO43924 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC12.28□□□□□ -0.44
PDE6DO43924 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC12.28□□□□□ -0.44
PDE6DO43924 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC12.28□□□□□ -0.44
PDE6DO43924 RBSN-204ENST00000449050 903 ntTSL 2 BASIC12.28□□□□□ -0.44
PDE6DO43924 CDV3-207ENST00000508481 661 ntTSL 3 BASIC12.28□□□□□ -0.44
PDE6DO43924 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC12.28□□□□□ -0.44
PDE6DO43924 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC12.28□□□□□ -0.44
PDE6DO43924 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC12.28□□□□□ -0.44
PDE6DO43924 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC12.28□□□□□ -0.44
PDE6DO43924 BNIP3P18-201ENST00000593976 575 ntBASIC12.28□□□□□ -0.44
PDE6DO43924 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 AC091076.1-201ENST00000610741 619 ntBASIC12.28□□□□□ -0.44
PDE6DO43924 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC12.28□□□□□ -0.44
PDE6DO43924 AL022326.1-202ENST00000641533 845 ntBASIC12.28□□□□□ -0.44
PDE6DO43924 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 AC134407.2-201ENST00000625089 1978 ntBASIC12.28□□□□□ -0.44
PDE6DO43924 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC12.28□□□□□ -0.44
PDE6DO43924 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
PDE6DO43924 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
PDE6DO43924 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
PDE6DO43924 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC12.28□□□□□ -0.44
PDE6DO43924 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDE6DO43924 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC12.28□□□□□ -0.44
PDE6DO43924 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
PDE6DO43924 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
PDE6DO43924 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
PDE6DO43924 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC12.27□□□□□ -0.44
PDE6DO43924 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
PDE6DO43924 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.44
PDE6DO43924 LINC01230-201ENST00000625222 3017 ntBASIC12.27□□□□□ -0.44
PDE6DO43924 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC12.27□□□□□ -0.44
PDE6DO43924 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
PDE6DO43924 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC12.27□□□□□ -0.44
PDE6DO43924 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.44
PDE6DO43924 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
PDE6DO43924 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
PDE6DO43924 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
PDE6DO43924 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
PDE6DO43924 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDE6DO43924 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDE6DO43924 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDE6DO43924 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDE6DO43924 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDE6DO43924 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC12.27□□□□□ -0.45
PDE6DO43924 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
PDE6DO43924 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.45
PDE6DO43924 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
PDE6DO43924 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
PDE6DO43924 THAP5-204ENST00000438865 868 ntTSL 2 BASIC12.27□□□□□ -0.45
PDE6DO43924 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
PDE6DO43924 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC12.27□□□□□ -0.45
PDE6DO43924 AC093724.1-201ENST00000448659 1027 ntBASIC12.27□□□□□ -0.45
PDE6DO43924 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
PDE6DO43924 MIR4497-201ENST00000583208 89 ntBASIC12.27□□□□□ -0.45
PDE6DO43924 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDE6DO43924 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
PDE6DO43924 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
PDE6DO43924 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC12.27□□□□□ -0.45
PDE6DO43924 PID1-202ENST00000392054 2745 ntTSL 2 BASIC12.27□□□□□ -0.45
PDE6DO43924 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDE6DO43924 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.45
PDE6DO43924 AC233702.3-201ENST00000578656 1387 ntBASIC12.27□□□□□ -0.45
PDE6DO43924 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDE6DO43924 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDE6DO43924 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC12.27□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms