Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC17.72■□□□□ 0.43
CHMP2AO43633 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.72■□□□□ 0.43
CHMP2AO43633 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.72■□□□□ 0.43
CHMP2AO43633 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.72■□□□□ 0.43
CHMP2AO43633 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.72■□□□□ 0.43
CHMP2AO43633 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CHMP2AO43633 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CHMP2AO43633 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CHMP2AO43633 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CHMP2AO43633 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CHMP2AO43633 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.72■□□□□ 0.43
CHMP2AO43633 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC17.72■□□□□ 0.43
CHMP2AO43633 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC17.72■□□□□ 0.43
CHMP2AO43633 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.72■□□□□ 0.43
CHMP2AO43633 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.72■□□□□ 0.43
CHMP2AO43633 AC105233.6-201ENST00000642093 218 ntBASIC17.72■□□□□ 0.43
CHMP2AO43633 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.72■□□□□ 0.43
CHMP2AO43633 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.72■□□□□ 0.43
CHMP2AO43633 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP2AO43633 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
CHMP2AO43633 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.72■□□□□ 0.43
CHMP2AO43633 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP2AO43633 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP2AO43633 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP2AO43633 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP2AO43633 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP2AO43633 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP2AO43633 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CHMP2AO43633 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP2AO43633 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP2AO43633 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP2AO43633 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP2AO43633 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP2AO43633 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP2AO43633 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP2AO43633 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP2AO43633 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP2AO43633 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.71■□□□□ 0.43
CHMP2AO43633 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.71■□□□□ 0.43
CHMP2AO43633 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP2AO43633 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.71■□□□□ 0.43
CHMP2AO43633 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP2AO43633 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP2AO43633 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.71■□□□□ 0.43
CHMP2AO43633 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP2AO43633 AC068587.6-202ENST00000641839 5619 ntBASIC17.71■□□□□ 0.43
CHMP2AO43633 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP2AO43633 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP2AO43633 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP2AO43633 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP2AO43633 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP2AO43633 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP2AO43633 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP2AO43633 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP2AO43633 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.71■□□□□ 0.42
CHMP2AO43633 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
CHMP2AO43633 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP2AO43633 AP005117.1-202ENST00000581724 1908 ntBASIC17.7■□□□□ 0.42
CHMP2AO43633 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CHMP2AO43633 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
CHMP2AO43633 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.7■□□□□ 0.42
CHMP2AO43633 CLK3P2-201ENST00000427566 1453 ntBASIC17.7■□□□□ 0.42
CHMP2AO43633 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP2AO43633 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP2AO43633 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
CHMP2AO43633 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CHMP2AO43633 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP2AO43633 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.7■□□□□ 0.42
CHMP2AO43633 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC17.7■□□□□ 0.42
CHMP2AO43633 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP2AO43633 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP2AO43633 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CHMP2AO43633 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP2AO43633 AC087499.6-201ENST00000411576 835 ntBASIC17.7■□□□□ 0.42
CHMP2AO43633 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC17.7■□□□□ 0.42
CHMP2AO43633 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.7■□□□□ 0.42
CHMP2AO43633 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.7■□□□□ 0.42
CHMP2AO43633 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.7■□□□□ 0.42
CHMP2AO43633 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.7■□□□□ 0.42
CHMP2AO43633 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms