Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 C18orf15-201ENST00000623680 2534 ntBASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS29Q9UBQ0 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 AC254562.1-201ENST00000417586 456 ntBASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 AC092865.5-201ENST00000545435 363 ntBASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 AL133215.2-201ENST00000609242 977 ntBASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 AL607033.1-201ENST00000623900 1599 ntBASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS29Q9UBQ0 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 SPDYE7P-202ENST00000420373 878 ntBASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 MTND6P24-201ENST00000440466 518 ntBASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 MIR4453-201ENST00000584019 89 ntBASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 AP001059.3-201ENST00000619053 235 ntBASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS29Q9UBQ0 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms