Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.9■□□□□ 0.3
CNTN3Q9P232 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.9■□□□□ 0.3
CNTN3Q9P232 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CNTN3Q9P232 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CNTN3Q9P232 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CNTN3Q9P232 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.9■□□□□ 0.3
CNTN3Q9P232 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CNTN3Q9P232 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CNTN3Q9P232 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CNTN3Q9P232 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
CNTN3Q9P232 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 AL162726.2-201ENST00000438986 1017 ntBASIC16.89■□□□□ 0.29
CNTN3Q9P232 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 AC120045.2-201ENST00000567334 178 ntBASIC16.89■□□□□ 0.29
CNTN3Q9P232 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CNTN3Q9P232 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.89■□□□□ 0.29
CNTN3Q9P232 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CNTN3Q9P232 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.88■□□□□ 0.29
CNTN3Q9P232 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CNTN3Q9P232 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CNTN3Q9P232 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CNTN3Q9P232 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 TTTY23B-201ENST00000442790 549 ntBASIC16.88■□□□□ 0.29
CNTN3Q9P232 AC007389.4-201ENST00000454674 793 ntBASIC16.88■□□□□ 0.29
CNTN3Q9P232 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 AC026410.3-201ENST00000514280 936 ntBASIC16.88■□□□□ 0.29
CNTN3Q9P232 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.88■□□□□ 0.29
CNTN3Q9P232 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CNTN3Q9P232 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CNTN3Q9P232 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CNTN3Q9P232 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CNTN3Q9P232 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CNTN3Q9P232 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 PAUPAR-201ENST00000630360 2965 ntBASIC16.88■□□□□ 0.29
CNTN3Q9P232 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.88■□□□□ 0.29
CNTN3Q9P232 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CNTN3Q9P232 KRT8P22-201ENST00000562317 1415 ntBASIC16.87■□□□□ 0.29
CNTN3Q9P232 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CNTN3Q9P232 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CNTN3Q9P232 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CNTN3Q9P232 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CNTN3Q9P232 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.87■□□□□ 0.29
CNTN3Q9P232 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CNTN3Q9P232 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CNTN3Q9P232 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CNTN3Q9P232 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.87■□□□□ 0.29
CNTN3Q9P232 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.87■□□□□ 0.29
CNTN3Q9P232 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CNTN3Q9P232 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CNTN3Q9P232 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CNTN3Q9P232 SOCS2P1-201ENST00000417727 557 ntBASIC16.87■□□□□ 0.29
CNTN3Q9P232 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms