Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL20A1Q9P218 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.69■□□□□ 0.42
COL20A1Q9P218 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL20A1Q9P218 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
COL20A1Q9P218 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
COL20A1Q9P218 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
COL20A1Q9P218 PRAL-201ENST00000624952 3286 ntBASIC17.68■□□□□ 0.42
COL20A1Q9P218 AL138799.1-201ENST00000448213 1675 ntBASIC17.68■□□□□ 0.42
COL20A1Q9P218 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC17.68■□□□□ 0.42
COL20A1Q9P218 BRF1-202ENST00000379932 884 ntTSL 5 BASIC17.68■□□□□ 0.42
COL20A1Q9P218 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.68■□□□□ 0.42
COL20A1Q9P218 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.68■□□□□ 0.42
COL20A1Q9P218 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.68■□□□□ 0.42
COL20A1Q9P218 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.68■□□□□ 0.42
COL20A1Q9P218 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC17.68■□□□□ 0.42
COL20A1Q9P218 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC17.68■□□□□ 0.42
COL20A1Q9P218 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.68■□□□□ 0.42
COL20A1Q9P218 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL20A1Q9P218 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC17.67■□□□□ 0.42
COL20A1Q9P218 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 DOC2GP-204ENST00000639052 2548 ntBASIC17.67■□□□□ 0.42
COL20A1Q9P218 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.67■□□□□ 0.42
COL20A1Q9P218 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.67■□□□□ 0.42
COL20A1Q9P218 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
COL20A1Q9P218 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
COL20A1Q9P218 AC099336.1-201ENST00000417053 1171 ntBASIC17.67■□□□□ 0.42
COL20A1Q9P218 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC17.67■□□□□ 0.42
COL20A1Q9P218 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC17.67■□□□□ 0.42
COL20A1Q9P218 GPR39-203ENST00000622084 900 ntTSL 5 BASIC17.67■□□□□ 0.42
COL20A1Q9P218 AL033527.4-201ENST00000641026 673 ntBASIC17.67■□□□□ 0.42
COL20A1Q9P218 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC17.67■□□□□ 0.42
COL20A1Q9P218 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC17.67■□□□□ 0.42
COL20A1Q9P218 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
COL20A1Q9P218 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.67■□□□□ 0.42
COL20A1Q9P218 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
COL20A1Q9P218 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL20A1Q9P218 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL20A1Q9P218 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL20A1Q9P218 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL20A1Q9P218 ACKR1-201ENST00000368121 1240 ntBASIC17.66■□□□□ 0.42
COL20A1Q9P218 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL20A1Q9P218 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL20A1Q9P218 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 AC007551.1-201ENST00000457394 519 ntBASIC17.66■□□□□ 0.42
COL20A1Q9P218 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL20A1Q9P218 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL20A1Q9P218 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.66■□□□□ 0.42
COL20A1Q9P218 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL20A1Q9P218 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL20A1Q9P218 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms