Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 AC148477.4-201ENST00000613430 1793 ntBASIC15.7■□□□□ 0.1
TREX1Q9NSU2 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 AC023024.2-201ENST00000623561 1993 ntBASIC15.7■□□□□ 0.1
TREX1Q9NSU2 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 AC140878.1-201ENST00000565277 250 ntBASIC15.7■□□□□ 0.1
TREX1Q9NSU2 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
TREX1Q9NSU2 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.7■□□□□ 0.1
TREX1Q9NSU2 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 TCAF2P1-201ENST00000291129 2421 ntBASIC15.69■□□□□ 0.1
TREX1Q9NSU2 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 AC092580.3-201ENST00000430932 139 ntBASIC15.69■□□□□ 0.1
TREX1Q9NSU2 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 AC069120.2-201ENST00000524091 540 ntBASIC15.69■□□□□ 0.1
TREX1Q9NSU2 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 AC004449.1-201ENST00000564240 433 ntBASIC15.69■□□□□ 0.1
TREX1Q9NSU2 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
TREX1Q9NSU2 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 MST1L-201ENST00000442552 2185 ntBASIC15.68■□□□□ 0.1
TREX1Q9NSU2 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms