Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA3P55318 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA3P55318 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
FOXA3P55318 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
FOXA3P55318 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC11.93□□□□□ -0.5
FOXA3P55318 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC11.93□□□□□ -0.5
FOXA3P55318 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 AC129492.6-201ENST00000611383 1305 ntBASIC11.93□□□□□ -0.5
FOXA3P55318 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC11.93□□□□□ -0.5
FOXA3P55318 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
FOXA3P55318 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC11.93□□□□□ -0.5
FOXA3P55318 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
FOXA3P55318 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
FOXA3P55318 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
FOXA3P55318 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC11.93□□□□□ -0.5
FOXA3P55318 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 AC107918.2-201ENST00000530817 355 ntBASIC11.93□□□□□ -0.5
FOXA3P55318 AL136038.3-201ENST00000561909 1096 ntBASIC11.93□□□□□ -0.5
FOXA3P55318 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC11.93□□□□□ -0.5
FOXA3P55318 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC11.93□□□□□ -0.5
FOXA3P55318 AL365330.1-201ENST00000607459 531 ntBASIC11.93□□□□□ -0.5
FOXA3P55318 AC133561.5-201ENST00000635547 218 ntBASIC11.93□□□□□ -0.5
FOXA3P55318 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 AP001282.1-201ENST00000531301 1499 ntBASIC11.93□□□□□ -0.5
FOXA3P55318 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
FOXA3P55318 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
FOXA3P55318 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
FOXA3P55318 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
FOXA3P55318 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
FOXA3P55318 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC11.93□□□□□ -0.5
FOXA3P55318 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA3P55318 AJ011931.1-201ENST00000618749 2492 ntBASIC11.93□□□□□ -0.5
FOXA3P55318 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
FOXA3P55318 RELA-227ENST00000615805 2236 ntTSL 5 BASIC11.92□□□□□ -0.5
FOXA3P55318 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 NSUN5P1-202ENST00000421140 1535 ntBASIC11.92□□□□□ -0.5
FOXA3P55318 NSUN5P2-203ENST00000457352 1529 ntBASIC11.92□□□□□ -0.5
FOXA3P55318 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
FOXA3P55318 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC11.92□□□□□ -0.5
FOXA3P55318 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
FOXA3P55318 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC11.92□□□□□ -0.5
FOXA3P55318 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC11.92□□□□□ -0.5
FOXA3P55318 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC11.92□□□□□ -0.5
FOXA3P55318 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC11.92□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms