Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.38■□□□□ 0.21
PTPN9P43378 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
PTPN9P43378 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
PTPN9P43378 AC015910.1-201ENST00000579400 975 ntBASIC16.38■□□□□ 0.21
PTPN9P43378 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.38■□□□□ 0.21
PTPN9P43378 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.38■□□□□ 0.21
PTPN9P43378 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.38■□□□□ 0.21
PTPN9P43378 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PTPN9P43378 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
PTPN9P43378 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
PTPN9P43378 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PTPN9P43378 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
PTPN9P43378 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
PTPN9P43378 AC112693.3-201ENST00000624819 1983 ntBASIC16.37■□□□□ 0.21
PTPN9P43378 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PTPN9P43378 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
PTPN9P43378 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.37■□□□□ 0.21
PTPN9P43378 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.37■□□□□ 0.21
PTPN9P43378 AC093214.1-201ENST00000511688 1107 ntBASIC16.37■□□□□ 0.21
PTPN9P43378 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.37■□□□□ 0.21
PTPN9P43378 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.37■□□□□ 0.21
PTPN9P43378 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.37■□□□□ 0.21
PTPN9P43378 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PTPN9P43378 AC008738.7-201ENST00000609744 511 ntBASIC16.37■□□□□ 0.21
PTPN9P43378 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.37■□□□□ 0.21
PTPN9P43378 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.37■□□□□ 0.21
PTPN9P43378 AC073347.1-201ENST00000421633 2643 ntBASIC16.37■□□□□ 0.21
PTPN9P43378 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PTPN9P43378 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
PTPN9P43378 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.37■□□□□ 0.21
PTPN9P43378 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 AC013268.4-201ENST00000637413 2228 ntBASIC16.37■□□□□ 0.21
PTPN9P43378 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.37■□□□□ 0.21
PTPN9P43378 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTPN9P43378 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
PTPN9P43378 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
PTPN9P43378 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.36■□□□□ 0.21
PTPN9P43378 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
PTPN9P43378 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTPN9P43378 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTPN9P43378 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PTPN9P43378 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
PTPN9P43378 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
PTPN9P43378 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTPN9P43378 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PTPN9P43378 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.36■□□□□ 0.21
PTPN9P43378 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTPN9P43378 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
PTPN9P43378 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.36■□□□□ 0.21
PTPN9P43378 AC084364.1-201ENST00000551967 1556 ntBASIC16.36■□□□□ 0.21
PTPN9P43378 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
PTPN9P43378 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.36■□□□□ 0.21
PTPN9P43378 RPL5P21-201ENST00000404620 815 ntBASIC16.36■□□□□ 0.21
PTPN9P43378 MRPS18AP1-201ENST00000414458 589 ntBASIC16.36■□□□□ 0.21
PTPN9P43378 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
PTPN9P43378 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.36■□□□□ 0.21
PTPN9P43378 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.36■□□□□ 0.21
PTPN9P43378 AL512638.1-201ENST00000457493 794 ntBASIC16.36■□□□□ 0.21
PTPN9P43378 AC004840.1-201ENST00000636359 365 ntBASIC16.36■□□□□ 0.21
PTPN9P43378 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.36■□□□□ 0.21
PTPN9P43378 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.36■□□□□ 0.21
PTPN9P43378 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTPN9P43378 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTPN9P43378 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.36■□□□□ 0.21
PTPN9P43378 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.36■□□□□ 0.21
PTPN9P43378 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms