Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SLC6A4P31645 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC6A4P31645 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC6A4P31645 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC6A4P31645 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC6A4P31645 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC6A4P31645 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC6A4P31645 AL133267.1-201ENST00000398220 340 ntBASIC16.13■□□□□ 0.17
SLC6A4P31645 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SLC6A4P31645 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.13■□□□□ 0.17
SLC6A4P31645 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.13■□□□□ 0.17
SLC6A4P31645 RN7SL837P-201ENST00000463010 287 ntBASIC16.13■□□□□ 0.17
SLC6A4P31645 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.13■□□□□ 0.17
SLC6A4P31645 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.13■□□□□ 0.17
SLC6A4P31645 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
SLC6A4P31645 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SLC6A4P31645 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SLC6A4P31645 AL049840.4-201ENST00000602422 811 ntBASIC16.13■□□□□ 0.17
SLC6A4P31645 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.13■□□□□ 0.17
SLC6A4P31645 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
SLC6A4P31645 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.13■□□□□ 0.17
SLC6A4P31645 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC6A4P31645 AC009090.5-201ENST00000624886 2285 ntBASIC16.13■□□□□ 0.17
SLC6A4P31645 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SLC6A4P31645 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SLC6A4P31645 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.13■□□□□ 0.17
SLC6A4P31645 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC6A4P31645 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC6A4P31645 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SLC6A4P31645 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC6A4P31645 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC6A4P31645 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC6A4P31645 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.12■□□□□ 0.17
SLC6A4P31645 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC6A4P31645 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SLC6A4P31645 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
SLC6A4P31645 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC6A4P31645 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC6A4P31645 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC6A4P31645 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.12■□□□□ 0.17
SLC6A4P31645 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.12■□□□□ 0.17
SLC6A4P31645 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC6A4P31645 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC6A4P31645 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC6A4P31645 AL359711.2-201ENST00000563105 872 ntBASIC16.12■□□□□ 0.17
SLC6A4P31645 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC6A4P31645 PAM16-204ENST00000571941 674 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC6A4P31645 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC6A4P31645 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC6A4P31645 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.12■□□□□ 0.17
SLC6A4P31645 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC6A4P31645 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 AC127383.1-201ENST00000444697 1800 ntBASIC16.12■□□□□ 0.17
SLC6A4P31645 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SLC6A4P31645 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SLC6A4P31645 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SLC6A4P31645 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC6A4P31645 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.11■□□□□ 0.17
SLC6A4P31645 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC6A4P31645 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.11■□□□□ 0.17
SLC6A4P31645 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC6A4P31645 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
SLC6A4P31645 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC6A4P31645 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC6A4P31645 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC6A4P31645 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.11■□□□□ 0.17
SLC6A4P31645 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC6A4P31645 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
SLC6A4P31645 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SLC6A4P31645 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC6A4P31645 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC6A4P31645 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.11■□□□□ 0.17
SLC6A4P31645 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.11■□□□□ 0.17
SLC6A4P31645 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SLC6A4P31645 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.11■□□□□ 0.17
SLC6A4P31645 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC6A4P31645 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC6A4P31645 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms