Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
CXCL1P09341 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
CXCL1P09341 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC12.31□□□□□ -0.44
CXCL1P09341 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
CXCL1P09341 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC12.31□□□□□ -0.44
CXCL1P09341 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC12.31□□□□□ -0.44
CXCL1P09341 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC12.31□□□□□ -0.44
CXCL1P09341 AL590326.2-201ENST00000625139 305 ntBASIC12.31□□□□□ -0.44
CXCL1P09341 AC019294.4-201ENST00000561777 2905 ntBASIC12.31□□□□□ -0.44
CXCL1P09341 PC-214ENST00000628663 1470 ntTSL 5 BASIC12.31□□□□□ -0.44
CXCL1P09341 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
CXCL1P09341 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC12.31□□□□□ -0.44
CXCL1P09341 AL592424.1-201ENST00000563624 1536 ntBASIC12.31□□□□□ -0.44
CXCL1P09341 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
CXCL1P09341 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC12.31□□□□□ -0.44
CXCL1P09341 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC12.3□□□□□ -0.44
CXCL1P09341 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC12.3□□□□□ -0.44
CXCL1P09341 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
CXCL1P09341 AC083964.2-201ENST00000623988 2396 ntBASIC12.3□□□□□ -0.44
CXCL1P09341 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC12.3□□□□□ -0.44
CXCL1P09341 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
CXCL1P09341 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC12.3□□□□□ -0.44
CXCL1P09341 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
CXCL1P09341 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
CXCL1P09341 SRC-202ENST00000373558 4304 ntTSL 5 BASIC12.3□□□□□ -0.44
CXCL1P09341 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC12.3□□□□□ -0.44
CXCL1P09341 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC12.3□□□□□ -0.44
CXCL1P09341 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 SOD2-201ENST00000337404 991 ntTSL 2 BASIC12.3□□□□□ -0.44
CXCL1P09341 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC12.3□□□□□ -0.44
CXCL1P09341 TLE1-202ENST00000376484 666 ntTSL 3 BASIC12.3□□□□□ -0.44
CXCL1P09341 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC12.3□□□□□ -0.44
CXCL1P09341 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 AC063952.2-201ENST00000498792 1227 ntBASIC12.3□□□□□ -0.44
CXCL1P09341 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC12.3□□□□□ -0.44
CXCL1P09341 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC12.3□□□□□ -0.44
CXCL1P09341 SIGLEC29P-201ENST00000599873 1114 ntBASIC12.3□□□□□ -0.44
CXCL1P09341 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC12.3□□□□□ -0.44
CXCL1P09341 AC006011.2-201ENST00000621313 1158 ntBASIC12.3□□□□□ -0.44
CXCL1P09341 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC12.3□□□□□ -0.44
CXCL1P09341 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC12.3□□□□□ -0.44
CXCL1P09341 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC12.3□□□□□ -0.44
CXCL1P09341 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
CXCL1P09341 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC12.3□□□□□ -0.44
CXCL1P09341 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC12.3□□□□□ -0.44
CXCL1P09341 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC12.3□□□□□ -0.44
CXCL1P09341 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CXCL1P09341 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC12.29□□□□□ -0.44
CXCL1P09341 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CXCL1P09341 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CXCL1P09341 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC12.29□□□□□ -0.44
CXCL1P09341 ZBED1P1-201ENST00000502364 1930 ntBASIC12.29□□□□□ -0.44
CXCL1P09341 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
CXCL1P09341 C2-206ENST00000442278 2434 ntTSL 2 BASIC12.29□□□□□ -0.44
CXCL1P09341 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CXCL1P09341 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CXCL1P09341 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CXCL1P09341 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC12.29□□□□□ -0.44
CXCL1P09341 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
CXCL1P09341 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC12.29□□□□□ -0.44
CXCL1P09341 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms