Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.18■□□□□ 0.02
SEMA3DO95025 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.18■□□□□ 0.02
SEMA3DO95025 MIR1233-2-201ENST00000408138 82 ntBASIC15.18■□□□□ 0.02
SEMA3DO95025 MIR1233-1-201ENST00000408722 82 ntBASIC15.18■□□□□ 0.02
SEMA3DO95025 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.18■□□□□ 0.02
SEMA3DO95025 AC136604.1-201ENST00000418535 575 ntBASIC15.18■□□□□ 0.02
SEMA3DO95025 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.18■□□□□ 0.02
SEMA3DO95025 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.18■□□□□ 0.02
SEMA3DO95025 HNRNPUP1-201ENST00000554987 333 ntBASIC15.18■□□□□ 0.02
SEMA3DO95025 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.18■□□□□ 0.02
SEMA3DO95025 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.18■□□□□ 0.02
SEMA3DO95025 RN7SL828P-201ENST00000607615 303 ntBASIC15.18■□□□□ 0.02
SEMA3DO95025 AC079781.4-201ENST00000641908 219 ntBASIC15.18■□□□□ 0.02
SEMA3DO95025 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.18■□□□□ 0.02
SEMA3DO95025 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.18■□□□□ 0.02
SEMA3DO95025 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SEMA3DO95025 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
SEMA3DO95025 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SEMA3DO95025 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.17■□□□□ 0.02
SEMA3DO95025 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.17■□□□□ 0.02
SEMA3DO95025 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SEMA3DO95025 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
SEMA3DO95025 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
SEMA3DO95025 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.17■□□□□ 0.02
SEMA3DO95025 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SEMA3DO95025 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SEMA3DO95025 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.17■□□□□ 0.02
SEMA3DO95025 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.17■□□□□ 0.02
SEMA3DO95025 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.17■□□□□ 0.02
SEMA3DO95025 DNAJB3-202ENST00000449667 1266 ntBASIC15.17■□□□□ 0.02
SEMA3DO95025 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC15.17■□□□□ 0.02
SEMA3DO95025 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 WDR88-203ENST00000592765 651 ntTSL 5 BASIC15.17■□□□□ 0.02
SEMA3DO95025 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SEMA3DO95025 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.17■□□□□ 0.02
SEMA3DO95025 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
SEMA3DO95025 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.17■□□□□ 0.02
SEMA3DO95025 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.17■□□□□ 0.02
SEMA3DO95025 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
SEMA3DO95025 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
SEMA3DO95025 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SEMA3DO95025 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
SEMA3DO95025 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.16■□□□□ 0.02
SEMA3DO95025 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.16■□□□□ 0.02
SEMA3DO95025 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.16■□□□□ 0.02
SEMA3DO95025 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.16■□□□□ 0.02
SEMA3DO95025 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
SEMA3DO95025 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
SEMA3DO95025 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.16■□□□□ 0.02
SEMA3DO95025 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
SEMA3DO95025 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.16■□□□□ 0.02
SEMA3DO95025 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 KRT8P12-202ENST00000472924 1397 ntBASIC15.16■□□□□ 0.02
SEMA3DO95025 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SEMA3DO95025 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SEMA3DO95025 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.16■□□□□ 0.02
SEMA3DO95025 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms