Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.41■□□□□ 0.06
HDAC3O15379 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HDAC3O15379 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.41■□□□□ 0.06
HDAC3O15379 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.41■□□□□ 0.06
HDAC3O15379 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC15.41■□□□□ 0.06
HDAC3O15379 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.41■□□□□ 0.06
HDAC3O15379 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.41■□□□□ 0.06
HDAC3O15379 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC15.41■□□□□ 0.06
HDAC3O15379 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.41■□□□□ 0.06
HDAC3O15379 AL773604.1-201ENST00000617417 272 ntBASIC15.41■□□□□ 0.06
HDAC3O15379 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.41■□□□□ 0.06
HDAC3O15379 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
HDAC3O15379 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.41■□□□□ 0.06
HDAC3O15379 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
HDAC3O15379 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
HDAC3O15379 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HDAC3O15379 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.41■□□□□ 0.06
HDAC3O15379 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HDAC3O15379 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.41■□□□□ 0.06
HDAC3O15379 AJ011931.1-201ENST00000618749 2492 ntBASIC15.41■□□□□ 0.06
HDAC3O15379 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.41■□□□□ 0.06
HDAC3O15379 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.41■□□□□ 0.06
HDAC3O15379 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HDAC3O15379 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
HDAC3O15379 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HDAC3O15379 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.4■□□□□ 0.06
HDAC3O15379 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.4■□□□□ 0.06
HDAC3O15379 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.4■□□□□ 0.06
HDAC3O15379 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.4■□□□□ 0.06
HDAC3O15379 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
HDAC3O15379 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
HDAC3O15379 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.4■□□□□ 0.06
HDAC3O15379 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.4■□□□□ 0.06
HDAC3O15379 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.4■□□□□ 0.06
HDAC3O15379 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.4■□□□□ 0.06
HDAC3O15379 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC15.4■□□□□ 0.06
HDAC3O15379 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.4■□□□□ 0.06
HDAC3O15379 RNA5SP415-201ENST00000517246 115 ntBASIC15.4■□□□□ 0.06
HDAC3O15379 AC105233.2-201ENST00000523697 349 ntBASIC15.4■□□□□ 0.06
HDAC3O15379 AF228730.5-201ENST00000530288 346 ntBASIC15.4■□□□□ 0.06
HDAC3O15379 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.4■□□□□ 0.06
HDAC3O15379 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.4■□□□□ 0.06
HDAC3O15379 AC116407.3-201ENST00000623905 1129 ntBASIC15.4■□□□□ 0.06
HDAC3O15379 AC004877.2-201ENST00000623941 599 ntBASIC15.4■□□□□ 0.06
HDAC3O15379 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.4■□□□□ 0.06
HDAC3O15379 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
HDAC3O15379 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.4■□□□□ 0.06
HDAC3O15379 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.4■□□□□ 0.06
HDAC3O15379 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
HDAC3O15379 BCAR1-209ENST00000546196 1340 ntBASIC15.4■□□□□ 0.06
HDAC3O15379 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.4■□□□□ 0.06
HDAC3O15379 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HDAC3O15379 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
HDAC3O15379 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.39■□□□□ 0.05
HDAC3O15379 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
HDAC3O15379 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.39■□□□□ 0.05
HDAC3O15379 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.39■□□□□ 0.05
HDAC3O15379 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.39■□□□□ 0.05
HDAC3O15379 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.39■□□□□ 0.05
HDAC3O15379 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.39■□□□□ 0.05
HDAC3O15379 AL031284.1-201ENST00000419297 478 ntBASIC15.39■□□□□ 0.05
HDAC3O15379 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.39■□□□□ 0.05
HDAC3O15379 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.39■□□□□ 0.05
HDAC3O15379 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms