Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CNTN3Q9P232 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CNTN3Q9P232 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CNTN3Q9P232 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CNTN3Q9P232 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.92■□□□□ 0.3
CNTN3Q9P232 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CNTN3Q9P232 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CNTN3Q9P232 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CNTN3Q9P232 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CNTN3Q9P232 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CNTN3Q9P232 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CNTN3Q9P232 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.92■□□□□ 0.3
CNTN3Q9P232 AC124283.3-201ENST00000570869 594 ntBASIC16.92■□□□□ 0.3
CNTN3Q9P232 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CNTN3Q9P232 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 INTS4P2-202ENST00000614726 2019 ntBASIC16.92■□□□□ 0.3
CNTN3Q9P232 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CNTN3Q9P232 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CNTN3Q9P232 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.92■□□□□ 0.3
CNTN3Q9P232 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CNTN3Q9P232 LINC00554-201ENST00000564841 3011 ntBASIC16.91■□□□□ 0.3
CNTN3Q9P232 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CNTN3Q9P232 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CNTN3Q9P232 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CNTN3Q9P232 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CNTN3Q9P232 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CNTN3Q9P232 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CNTN3Q9P232 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 AL359711.2-201ENST00000563105 872 ntBASIC16.91■□□□□ 0.3
CNTN3Q9P232 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 AC133539.2-201ENST00000604757 467 ntBASIC16.91■□□□□ 0.3
CNTN3Q9P232 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 RPSAP52-203ENST00000622976 1023 ntBASIC16.91■□□□□ 0.3
CNTN3Q9P232 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CNTN3Q9P232 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CNTN3Q9P232 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CNTN3Q9P232 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CNTN3Q9P232 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CNTN3Q9P232 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.91■□□□□ 0.3
CNTN3Q9P232 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CNTN3Q9P232 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CNTN3Q9P232 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.9■□□□□ 0.3
CNTN3Q9P232 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.9■□□□□ 0.3
CNTN3Q9P232 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CNTN3Q9P232 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.9■□□□□ 0.3
CNTN3Q9P232 AC103702.1-201ENST00000548801 2630 ntBASIC16.9■□□□□ 0.3
CNTN3Q9P232 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CNTN3Q9P232 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CNTN3Q9P232 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CNTN3Q9P232 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CNTN3Q9P232 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CNTN3Q9P232 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CNTN3Q9P232 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CNTN3Q9P232 AC134915.1-201ENST00000426461 574 ntBASIC16.9■□□□□ 0.3
CNTN3Q9P232 U91328.1-201ENST00000437528 223 ntBASIC16.9■□□□□ 0.3
CNTN3Q9P232 VDAC1P7-201ENST00000462417 847 ntBASIC16.9■□□□□ 0.3
CNTN3Q9P232 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.9■□□□□ 0.3
CNTN3Q9P232 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.9■□□□□ 0.3
CNTN3Q9P232 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CNTN3Q9P232 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.9■□□□□ 0.3
CNTN3Q9P232 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.9■□□□□ 0.3
CNTN3Q9P232 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.9■□□□□ 0.3
CNTN3Q9P232 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.9■□□□□ 0.3
CNTN3Q9P232 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CNTN3Q9P232 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms