Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CISHQ9NSE2 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.82■□□□□ 0.28
CISHQ9NSE2 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CISHQ9NSE2 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CISHQ9NSE2 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CISHQ9NSE2 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CISHQ9NSE2 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.82■□□□□ 0.28
CISHQ9NSE2 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.82■□□□□ 0.28
CISHQ9NSE2 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
CISHQ9NSE2 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.82■□□□□ 0.28
CISHQ9NSE2 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CISHQ9NSE2 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.82■□□□□ 0.28
CISHQ9NSE2 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.82■□□□□ 0.28
CISHQ9NSE2 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.82■□□□□ 0.28
CISHQ9NSE2 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.82■□□□□ 0.28
CISHQ9NSE2 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.82■□□□□ 0.28
CISHQ9NSE2 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CISHQ9NSE2 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CISHQ9NSE2 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CISHQ9NSE2 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.82■□□□□ 0.28
CISHQ9NSE2 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CISHQ9NSE2 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CISHQ9NSE2 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CISHQ9NSE2 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CISHQ9NSE2 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CISHQ9NSE2 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CISHQ9NSE2 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CISHQ9NSE2 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CISHQ9NSE2 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CISHQ9NSE2 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CISHQ9NSE2 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CISHQ9NSE2 AC046158.3-201ENST00000624947 2558 ntBASIC16.82■□□□□ 0.28
CISHQ9NSE2 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CISHQ9NSE2 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.81■□□□□ 0.28
CISHQ9NSE2 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CISHQ9NSE2 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
CISHQ9NSE2 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CISHQ9NSE2 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.81■□□□□ 0.28
CISHQ9NSE2 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CISHQ9NSE2 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.81■□□□□ 0.28
CISHQ9NSE2 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.81■□□□□ 0.28
CISHQ9NSE2 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.81■□□□□ 0.28
CISHQ9NSE2 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.81■□□□□ 0.28
CISHQ9NSE2 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.81■□□□□ 0.28
CISHQ9NSE2 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CISHQ9NSE2 AC092337.1-201ENST00000568699 1129 ntBASIC16.81■□□□□ 0.28
CISHQ9NSE2 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.81■□□□□ 0.28
CISHQ9NSE2 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 AC136621.1-201ENST00000624017 2304 ntBASIC16.81■□□□□ 0.28
CISHQ9NSE2 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.81■□□□□ 0.28
CISHQ9NSE2 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CISHQ9NSE2 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CISHQ9NSE2 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CISHQ9NSE2 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CISHQ9NSE2 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.8■□□□□ 0.28
CISHQ9NSE2 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.8■□□□□ 0.28
CISHQ9NSE2 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CISHQ9NSE2 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CISHQ9NSE2 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CISHQ9NSE2 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CISHQ9NSE2 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CISHQ9NSE2 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.8■□□□□ 0.28
CISHQ9NSE2 SSR4P1-203ENST00000599569 2260 ntBASIC16.8■□□□□ 0.28
CISHQ9NSE2 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CISHQ9NSE2 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CISHQ9NSE2 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CISHQ9NSE2 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.8■□□□□ 0.28
CISHQ9NSE2 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CISHQ9NSE2 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CISHQ9NSE2 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CISHQ9NSE2 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.8■□□□□ 0.28
CISHQ9NSE2 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CISHQ9NSE2 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.8■□□□□ 0.28
CISHQ9NSE2 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.8■□□□□ 0.28
CISHQ9NSE2 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.8■□□□□ 0.28
CISHQ9NSE2 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CISHQ9NSE2 BCRP1-201ENST00000444246 691 ntBASIC16.8■□□□□ 0.28
CISHQ9NSE2 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.8■□□□□ 0.28
CISHQ9NSE2 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CISHQ9NSE2 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.8■□□□□ 0.28
CISHQ9NSE2 TIMM17BP1-201ENST00000545713 516 ntBASIC16.8■□□□□ 0.28
CISHQ9NSE2 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.8■□□□□ 0.28
CISHQ9NSE2 SPCS2P1-201ENST00000561636 679 ntBASIC16.8■□□□□ 0.28
CISHQ9NSE2 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms