Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.27■□□□□ 0.03
VPS33AQ96AX1 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
VPS33AQ96AX1 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 WASH6P-202ENST00000359512 1437 ntBASIC15.26■□□□□ 0.03
VPS33AQ96AX1 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 SBF1P1-201ENST00000444527 5631 ntBASIC15.26■□□□□ 0.03
VPS33AQ96AX1 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 IGHV3-22-201ENST00000520721 359 ntBASIC15.26■□□□□ 0.03
VPS33AQ96AX1 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS33AQ96AX1 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 BCAR1-209ENST00000546196 1340 ntBASIC15.25■□□□□ 0.03
VPS33AQ96AX1 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 BNIP3P1-202ENST00000550043 1585 ntBASIC15.25■□□□□ 0.03
VPS33AQ96AX1 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 AC018845.2-201ENST00000568326 409 ntBASIC15.25■□□□□ 0.03
VPS33AQ96AX1 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 AC004877.2-201ENST00000623941 599 ntBASIC15.25■□□□□ 0.03
VPS33AQ96AX1 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 AC007686.3-201ENST00000619017 3487 ntBASIC15.25■□□□□ 0.03
VPS33AQ96AX1 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.25■□□□□ 0.03
VPS33AQ96AX1 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS33AQ96AX1 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS33AQ96AX1 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
VPS33AQ96AX1 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS33AQ96AX1 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS33AQ96AX1 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS33AQ96AX1 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS33AQ96AX1 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS33AQ96AX1 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS33AQ96AX1 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms