Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 YBX2P1-201ENST00000394192 760 ntBASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 AC079140.1-201ENST00000508039 487 ntBASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 MIR4313-201ENST00000580760 101 ntBASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CLHC1Q8NHS4 C18orf15-201ENST00000623680 2534 ntBASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 IGHV3-62-201ENST00000520057 340 ntBASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 FAM86C2P-203ENST00000528684 1004 ntBASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 AC026120.1-201ENST00000611536 926 ntBASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.23■□□□□ 0.03
CLHC1Q8NHS4 UXT-AS1-201ENST00000590504 1525 ntBASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms