Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 HLA-H-201ENST00000383620 1096 ntBASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 AL355306.1-201ENST00000415580 579 ntBASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 AL645939.2-201ENST00000427340 991 ntBASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 AL139010.1-201ENST00000454878 894 ntBASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 CCDC74BP1-201ENST00000508880 1123 ntBASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 INO80E-210ENST00000567705 880 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 BX640515.1-201ENST00000617215 977 ntBASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 AC023157.3-201ENST00000619086 2088 ntBASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 PRAL-201ENST00000624952 3286 ntBASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 AC142381.1-201ENST00000426099 345 ntBASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 ACTG1P14-201ENST00000446382 1122 ntBASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 KRT18P3-201ENST00000451602 1288 ntBASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 AL135744.1-201ENST00000565098 629 ntBASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC54Q8NEL0 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
CCDC54Q8NEL0 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.19
CCDC54Q8NEL0 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC13.83□□□□□ -0.19
CCDC54Q8NEL0 ILF3-AS1-201ENST00000591501 1983 ntBASIC13.83□□□□□ -0.19
CCDC54Q8NEL0 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC54Q8NEL0 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC54Q8NEL0 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.83□□□□□ -0.19
CCDC54Q8NEL0 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC54Q8NEL0 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms